BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1670
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582981.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 29 348
gb|DS990656.1| Homo sapiens SCAF_1112675837090 genomic scaf... 29 348
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 29 348
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 29 348
ref|NW_001838990.2| Homo sapiens chromosome 6 genomic conti... 29 348
ref|NW_923184.1| Homo sapiens chromosome 6 genomic contig, ... 29 348
ref|NT_025741.15| Homo sapiens chromosome 6 genomic contig,... 29 348
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 29 348
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 29 348
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 29 348
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|GL583121.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583203.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000505.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 28 907
gb|DS990721.1| Homo sapiens SCAF_1112675837201 genomic scaf... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003510.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003462.1| Homo sapiens chromosome 15, whole genome sho... 28 907
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NW_925840.1| Homo sapiens chromosome 15 genomic contig,... 28 907
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_010194.17| Homo sapiens chromosome 15 genomic contig... 28 907
ref|NW_001838214.2| Homo sapiens chromosome 15 genomic cont... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|NC_000015.9| Homo sapiens chromosome 15, GRCh37.p2 prim... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000147.1| Homo sapiens chromosome 15, alternate asse... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000058.1| Homo sapiens chromosome 15, alternate asse... 28 907
1_0 1 aaagatcaattattaactaaa 21
GL582981 44802664 ................a.... 44802684
CM000496 146360271 ................a.... 146360291
DS990656 8762838 ................a.... 8762818
CH003501 150813926 ................a.... 150813946
CH003453 145648148 ................a.... 145648168
NW_001838990 8762674 ................a.... 8762654
NW_923184 81605156 ................a.... 81605176
NT_025741 52965113 ................a.... 52965133
NC_000006 148795656 ................a.... 148795676
AC_000138 146360224 ................a.... 146360244
AC_000049 149536552 ................a.... 149536572
CM000493 152514426 .t.................. 152514445
GL583121 2712830 .t.................. 2712849
GL583203 1578790 ........a........... 1578771
CM000505 16524317 ........a........... 16524298
DS990653 38914033 .t.................. 38914014
DS990721 4195059 ........a........... 4195078
CH003498 160871137 .t.................. 160871156
CH003510 17139376 ........a........... 17139357
CH003450 152922987 .t.................. 152923006
CH003462 15574822 ........a........... 15574803
NW_001838884 38914791 .t.................. 38914772
NW_921807 61726100 .t.................. 61726119
NW_925840 6724438 ........a........... 6724419
NT_005612 61615016 .t.................. 61615035
NT_010194 10470917 ........a........... 10470898
NW_001838214 4195053 ........a........... 4195072
NC_000003 155119870 .t.................. 155119889
NC_000015 39680360 ........a........... 39680341
AC_000135 152514240 .t.................. 152514259
AC_000147 16523959 ........a........... 16523940
AC_000046 153540430 .t.................. 153540449
AC_000058 16441669 ........a........... 16441650
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 35,608,602
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 1000.0: 33
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 33
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)