BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1680
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000493.1|  Homo sapiens chromosome 3, whole genome shot...    28     907
gb|GL583121.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|DS990653.1|  Homo sapiens SCAF_1112675837330 genomic scaf...    28     907
gb|CH003498.1|  Homo sapiens chromosome 3, whole genome shot...    28     907
gb|CH003450.1|  Homo sapiens chromosome 3, whole genome shot...    28     907
ref|NW_001838884.2|  Homo sapiens chromosome 3 genomic conti...    28     907
ref|NW_921807.1|  Homo sapiens chromosome 3 genomic contig, ...    28     907
ref|NT_005612.16|  Homo sapiens chromosome 3 genomic contig,...    28     907
ref|NC_000003.11|  Homo sapiens chromosome 3, GRCh37.p2 prim...    28     907
ref|AC_000135.1|  Homo sapiens chromosome 3, alternate assem...    28     907
ref|AC_000046.1|  Homo sapiens chromosome 3, alternate assem...    28     907

1_0          2         tccaagcttaggagttatcc 21
CM000493     154152556 .........t.......... 154152537
GL583121     4321038   .........t.......... 4321019
DS990653     37275903  .........t.......... 37275922
CH003498     162505073 .........t.......... 162505054
CH003450     154559785 .........t.......... 154559766
NW_001838884 37276593  .........t.......... 37276612
NW_921807    63365246  .........t.......... 63365227
NT_005612    63251221  .........t.......... 63251202
NC_000003    156756075 .........t.......... 156756056
AC_000135    154152438 .........t.......... 154152419
AC_000046    155179576 .........t.......... 155179557

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 19,789,930
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)