BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1681
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583305.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|CM000506.1| Homo sapiens chromosome 16, whole genome sho... 29 348
gb|DS990948.1| Homo sapiens SCAF_1112675831593 genomic scaf... 29 348
gb|CH003511.1| Homo sapiens chromosome 16, whole genome sho... 29 348
gb|CH003463.1| Homo sapiens chromosome 16, whole genome sho... 29 348
ref|NW_926117.1| Homo sapiens chromosome 16 genomic contig,... 29 348
ref|NW_001838365.2| Homo sapiens chromosome 16 genomic cont... 29 348
ref|NT_010393.16| Homo sapiens chromosome 16 genomic contig... 29 348
ref|NC_000016.9| Homo sapiens chromosome 16, GRCh37.p2 prim... 29 348
ref|AC_000148.1| Homo sapiens chromosome 16, alternate asse... 29 348
ref|AC_000059.1| Homo sapiens chromosome 16, alternate asse... 29 348
gb|GL583010.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583248.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 28 907
gb|CM000504.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|DS990675.1| Homo sapiens SCAF_1112675837128 genomic scaf... 28 907
gb|DS990699.1| Homo sapiens SCAF_1112675837092 genomic scaf... 28 907
gb|CH003507.1| Homo sapiens chromosome 12, whole genome sho... 28 907
gb|CH003509.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 28 907
gb|CH003461.1| Homo sapiens chromosome 14, whole genome sho... 28 907
emb|AL954800.2| Human chromosome 14 complete sequence 28 907
ref|NW_925395.1| Homo sapiens chromosome 12 genomic contig,... 28 907
ref|NW_925561.1| Homo sapiens chromosome 14 genomic contig,... 28 907
ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig... 28 907
ref|NT_029419.12| Homo sapiens chromosome 12 genomic contig... 28 907
ref|NW_001838113.2| Homo sapiens chromosome 14 genomic cont... 28 907
ref|NW_001838060.2| Homo sapiens chromosome 12 genomic cont... 28 907
ref|NC_000014.8| Homo sapiens chromosome 14, GRCh37.p2 prim... 28 907
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 28 907
ref|AC_000146.1| Homo sapiens chromosome 14, alternate asse... 28 907
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 28 907
ref|AC_000057.1| Homo sapiens chromosome 14, alternate asse... 28 907
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 28 907
1_0 1 tcaggatttatttaacataga 21
GL583305 1073467 ...................t. 1073487
CM000506 16105356 ...................t. 16105336
DS990948 1082013 ...................t. 1082033
CH003511 16311927 ...................t. 16311907
CH003463 16536622 ...................t. 16536602
NW_926117 238785 ...................t. 238765
NW_001838365 1082054 ...................t. 1082074
NT_010393 17043771 ...................t. 17043751
NC_000016 17103771 ...................t. 17103751
AC_000148 16105452 ...................t. 16105432
AC_000059 16644883 ...................t. 16644863
GL583010 9700289 ..........a......... 9700270
GL583248 1956037 ............t....... 1956018
CM000502 71604045 ............t....... 71604064
CM000504 51351513 ..........a......... 51351532
DS990675 24556314 ..........a......... 24556295
DS990699 1962351 ............t....... 1962332
CH003507 74980924 ............t....... 74980943
CH003509 51758042 ..........a......... 51758061
CH003459 71988421 ............t....... 71988440
CH003461 50919012 ..........a......... 50919031
AL954800 51103250 ..........a......... 51103269
NW_925395 21845648 ............t....... 21845667
NW_925561 18001696 ..........a......... 18001715
NT_026437 52183209 ..........a......... 52183228
NT_029419 36698298 ............t....... 36698317
NW_001838113 24556831 ..........a......... 24556812
NW_001838060 1962435 ............t....... 1962416
NC_000014 71183209 ..........a......... 71183228
NC_000012 74554992 ............t....... 74555011
AC_000146 51351711 ..........a......... 51351730
AC_000144 71604142 ............t....... 71604161
AC_000057 51247166 ..........a......... 51247185
AC_000055 74221819 ............t....... 74221838
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 54,794,032
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 1000.0: 34
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 34
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)