BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1682
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583027.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583080.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000497.1|  Homo sapiens chromosome 7, whole genome shot...    28     907
gb|CM000500.1|  Homo sapiens chromosome 10, whole genome sho...    28     907
gb|DS990680.1|  Homo sapiens SCAF_1112675837342 genomic scaf...    28     907
gb|DS990748.1|  Homo sapiens SCAF_1112675829122 genomic scaf...    28     907
gb|CH003502.1|  Homo sapiens chromosome 7, whole genome shot...    28     907
gb|CH003454.1|  Homo sapiens chromosome 7, whole genome shot...    28     907
gb|CH003457.1|  Homo sapiens chromosome 10, whole genome sho...    28     907
tpg|BL000002.1|  TPA: Homo sapiens chromosome 7                    28     907
ref|NW_001839072.1|  Homo sapiens chromosome 7 genomic conti...    28     907
ref|NW_924884.1|  Homo sapiens chromosome 10 genomic contig,...    28     907
ref|NW_923640.1|  Homo sapiens chromosome 7 genomic contig, ...    28     907
ref|NT_007933.15|  Homo sapiens chromosome 7 genomic contig,...    28     907
ref|NT_030059.13|  Homo sapiens chromosome 10 genomic contig...    28     907
ref|NW_001838006.2|  Homo sapiens chromosome 10 genomic cont...    28     907
ref|NT_079596.2|  Homo sapiens chromosome 7 genomic contig, ...    28     907
ref|NC_000007.13|  Homo sapiens chromosome 7, GRCh37.p2 prim...    28     907
ref|NC_000010.10|  Homo sapiens chromosome 10, GRCh37.p2 pri...    28     907
ref|AC_000139.1|  Homo sapiens chromosome 7, alternate assem...    28     907
ref|AC_000142.1|  Homo sapiens chromosome 10, alternate asse...    28     907
ref|AC_000068.1|  Homo sapiens chromosome 7, alternate assem...    28     907
ref|AC_000050.1|  Homo sapiens chromosome 7, alternate assem...    28     907
ref|AC_000053.1|  Homo sapiens chromosome 10, alternate asse...    28     907
1_0          2         gaggagacacacacctgtat 21
GL583027     9741882   .....c.............. 9741863
GL583080     2810967   .....c.............. 2810986
CM000497     132466539 .....c.............. 132466520
CM000500     96050917  .....c.............. 96050898
DS990680     22580790  .....c.............. 22580809
DS990748     6811603   .....c.............. 6811584
CH003502     127481372 .....c.............. 127481353
CH003454     133364272 .....c.............. 133364253
CH003457     95650809  .....c.............. 95650790
BL000002     137502830 .....c.............. 137502811
NW_001839072 6811701   .....c.............. 6811682
NW_924884    13163176  .....c.............. 13163157
NW_923640    35654606  .....c.............. 35654587
NT_007933    76190035  .....c.............. 76190016
NT_030059    53227024  .....c.............. 53227005
NW_001838006 22580530  .....c.............. 22580549
NT_079596    37537844  .....c.............. 37537825
NC_000007    138157192 .....c.............. 138157173
NC_000010    102422560 .....c.............. 102422541
AC_000139    132466314 .....c.............. 132466295
AC_000142    96051154  .....c.............. 96051135
AC_000068    137502276 .....c.............. 137502257
AC_000050    132895855 .....c.............. 132895836
AC_000053    96160359  .....c.............. 96160340
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 43,913,689
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 1000.0: 24
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 24
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)