BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1683
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|GL583071.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000505.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 28 907
gb|DS990730.1| Homo sapiens SCAF_1112675837306 genomic scaf... 28 907
gb|CH003510.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003462.1| Homo sapiens chromosome 15, whole genome sho... 28 907
ref|NW_925940.1| Homo sapiens chromosome 15 genomic contig,... 28 907
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_001838222.1| Homo sapiens chromosome 15 genomic cont... 28 907
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig,... 28 907
ref|NT_010274.17| Homo sapiens chromosome 15 genomic contig... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 907
ref|NC_000015.9| Homo sapiens chromosome 15, GRCh37.p2 prim... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000147.1| Homo sapiens chromosome 15, alternate asse... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000058.1| Homo sapiens chromosome 15, alternate asse... 28 907
1_0 2 gacatcaaggagaaaattat 21
CM000493 181488665 ........a........... 181488646
GL583071 8710896 ..................c. 8710877
CM000505 69764550 ..................c. 69764569
DS990653 9939794 ........a........... 9939813
DS990730 8616433 ..................c. 8616452
CH003510 74370312 ..................c. 74370331
CH003450 182108650 ........a........... 182108631
CH003462 69561197 ..................c. 69561216
NW_925940 8532585 ..................c. 8532604
NW_001838884 9940135 ........a........... 9940154
NW_001838222 8616632 ..................c. 8616651
NW_921807 90709001 ........a........... 90708982
NT_005612 90577507 ........a........... 90577488
NT_005403 35014654 ..................t. 35014673
NT_010274 8593736 ..................c. 8593755
NC_000003 184082361 ........a........... 184082342
NC_000002 184805236 ..................t. 184805255
NC_000015 93628209 ..................c. 93628228
AC_000135 181488896 ........a........... 181488877
AC_000147 69764669 ..................c. 69764688
AC_000046 182523331 ........a........... 182523312
AC_000058 70039765 ..................c. 70039784
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 52,737,601
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 1000.0: 23
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 23
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)