BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1713
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582985.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 29 422
gb|DS990659.1| Homo sapiens SCAF_1112675837198 genomic scaf... 29 422
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 29 422
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 29 422
ref|NW_001839136.1| Homo sapiens chromosome 8 genomic conti... 29 422
ref|NW_923984.1| Homo sapiens chromosome 8 genomic contig, ... 29 422
ref|NT_008046.16| Homo sapiens chromosome 8 genomic contig,... 29 422
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 29 422
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 29 422
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 29 422
gb|GL583158.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000503.1| Homo sapiens chromosome 13, whole genome sho... 28 907
gb|DS990755.1| Homo sapiens SCAF_1112675837195 genomic scaf... 28 907
gb|CH003508.1| Homo sapiens chromosome 13, whole genome sho... 28 907
gb|CH003460.1| Homo sapiens chromosome 13, whole genome sho... 28 907
ref|NT_024524.14| Homo sapiens chromosome 13 genomic contig... 28 907
ref|NW_001838080.2| Homo sapiens chromosome 13 genomic cont... 28 907
ref|NW_925495.1| Homo sapiens chromosome 13 genomic contig,... 28 907
ref|NC_000013.10| Homo sapiens chromosome 13, GRCh37.p2 pri... 28 907
ref|AC_000145.1| Homo sapiens chromosome 13, alternate asse... 28 907
ref|AC_000056.1| Homo sapiens chromosome 13, alternate asse... 28 907
1_0 2 aggtatatgactttgctttt 21
GL582985 8524286 ................... 8524304
CM000498 105446269 ................... 105446287
DS990659 23388289 ................... 23388307
CH003503 108447430 ................... 108447448
CH003455 105673458 ................... 105673476
NW_001839136 23387774 ................... 23387792
NW_923984 23277183 ................... 23277201
NT_008046 23397743 ................... 23397761
NC_000008 110124194 ................... 110124212
AC_000140 105446250 ................... 105446268
AC_000051 106311865 ................... 106311883
GL583158 2558431 ........a........... 2558450
CM000503 35904859 ........a........... 35904840
DS990755 5345501 ........a........... 5345520
CH003508 29751584 ........a........... 29751603
CH003460 35775421 ........a........... 35775402
NT_024524 36171562 ........a........... 36171543
NW_001838080 5345461 ........a........... 5345480
NW_925495 2034679 ........a........... 2034660
NC_000013 55191562 ........a........... 55191543
AC_000145 35905684 ........a........... 35905665
AC_000056 36178116 ........a........... 36178097
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 32,695,184
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 1000.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)