BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1715
         (20 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL582989.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000504.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
gb|DS990735.1|  Homo sapiens SCAF_1112675837272 genomic scaf...    28     907
gb|CH003509.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
gb|CH003461.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
emb|AL954800.2|  Human chromosome 14 complete sequence             28     907
ref|NW_925561.1|  Homo sapiens chromosome 14 genomic contig,...    28     907
ref|NT_026437.12|  Homo sapiens chromosome 14 genomic contig...    28     907
ref|NW_001838115.2|  Homo sapiens chromosome 14 genomic cont...    28     907
ref|NC_000014.8|  Homo sapiens chromosome 14, GRCh37.p2 prim...    28     907
ref|AC_000146.1|  Homo sapiens chromosome 14, alternate asse...    28     907
ref|AC_000057.1|  Homo sapiens chromosome 14, alternate asse...    28     907

1_0          1         aggaggatgaaatagatggt 20
GL582989     28250424  ..............t..... 28250443
CM000504     83351736  ..............t..... 83351755
DS990735     1529354   ..............t..... 1529335
CH003509     84933575  ..............t..... 84933594
CH003461     82932533  ..............t..... 82932552
AL954800     83095836  ..............t..... 83095855
NW_925561    49984461  ..............t..... 49984480
NT_026437    84175795  ..............t..... 84175814
NW_001838115 1529395   ..............t..... 1529376
NC_000014    103175795 ..............t..... 103175814
AC_000146    83352524  ..............t..... 83352543
AC_000057    83229931  ..............t..... 83229950

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 34,302,902
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 1000.0: 12
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 20
Length of database: 31,910,071,267
Length adjustment: 14
Effective length of query: 6
Effective length of database: 31,910,050,337
Effective search space: 191460302022
Effective search space used: 191460302022
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)