BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1733
         (19 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583077.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|CM000502.1|  Homo sapiens chromosome 12, whole genome sho...    29     422
gb|DS990764.1|  Homo sapiens SCAF_1112675837335 genomic scaf...    29     422
gb|CH003507.1|  Homo sapiens chromosome 12, whole genome sho...    29     422
gb|CH003459.1|  Homo sapiens chromosome 12, whole genome sho...    29     422
ref|NW_925395.1|  Homo sapiens chromosome 12 genomic contig,...    29     422
ref|NT_009755.19|  Homo sapiens chromosome 12 genomic contig...    29     422
ref|NW_001838064.2|  Homo sapiens chromosome 12 genomic cont...    29     422
ref|NC_000012.11|  Homo sapiens chromosome 12, GRCh37.p2 pri...    29     422
ref|AC_000144.1|  Homo sapiens chromosome 12, alternate asse...    29     422
ref|AC_000055.1|  Homo sapiens chromosome 12, alternate asse...    29     422

1_0          1         aggtatttgaatttgcatt 19
GL583077     1779768   ................... 1779786
CM000502     122655507 ................... 122655525
DS990764     3287854   ................... 3287836
CH003507     131753579 ................... 131753597
CH003459     123000262 ................... 123000280
NW_925395    72920894  ................... 72920912
NT_009755    3111966   ................... 3111984
NW_001838064 3287888   ................... 3287870
NC_000012    125692589 ................... 125692607
AC_000144    122655890 ................... 122655908
AC_000055    125297065 ................... 125297083

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 36,014,172
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)