BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1752
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|GL583056.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583177.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|DS990689.1| Homo sapiens SCAF_1112675837248 genomic scaf... 28 907
gb|DS990708.1| Homo sapiens SCAF_1112675837075 genomic scaf... 28 907
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 907
ref|NW_001838920.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_001838914.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_922217.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NW_922162.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NT_022778.16| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 907
1_0 1 ctttgcttttcgggatttatg 21
CM000494 69796005 ........c........... 69796024
CM000494 116459255 ...........t........ 116459274
GL583056 10121660 ...........t........ 10121641
GL583177 2478844 ........c........... 2478863
DS990689 1304871 ...........t........ 1304890
DS990708 14097509 ........c........... 14097528
CH003499 72495195 ........c........... 72495176
CH003499 122396356 ...........t........ 122396375
CH003451 69956348 ........c........... 69956367
CH003451 117338098 ...........t........ 117338117
NW_001838920 1304819 ...........t........ 1304838
NW_001838914 14097179 ........c........... 14097198
NW_922217 373894 ...........t........ 373913
NW_922162 21169982 ........c........... 21170001
NT_022778 14199664 ........c........... 14199683
NT_016354 45284626 ...........t........ 45284645
NC_000004 73988997 ........c........... 73989016
NC_000004 120736905 ...........t........ 120736924
AC_000136 69795465 ........c........... 69795484
AC_000136 116458250 ...........t........ 116458269
AC_000047 71345008 ........c........... 71345027
AC_000047 118116415 ...........t........ 118116434
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 26,158,875
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 1000.0: 16
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)