BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1775
(29 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 32 35
gb|GL583121.1| Homo sapiens unplaced genomic scaffold scaff... 32 35
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 32 35
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 32 35
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 32 35
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 32 35
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 32 35
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 32 35
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 32 35
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 32 35
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 32 35
gb|GL583300.1| Homo sapiens unplaced genomic scaffold scaff... 31 91
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 31 91
gb|CH003507.1| Homo sapiens chromosome 12, whole genome sho... 31 91
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 31 91
ref|NW_925395.1| Homo sapiens chromosome 12 genomic contig,... 31 91
ref|NT_009755.19| Homo sapiens chromosome 12 genomic contig... 31 91
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 31 91
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 31 91
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 31 91
gb|GL582985.1| Homo sapiens unplaced genomic scaffold scaff... 30 162
gb|GL583018.1| Homo sapiens unplaced genomic scaffold scaff... 30 162
gb|GL583027.1| Homo sapiens unplaced genomic scaffold scaff... 30 162
gb|GL583299.1| Homo sapiens unplaced genomic scaffold scaff... 30 162
gb|CM000497.1| Homo sapiens chromosome 7, whole genome shot... 30 162
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 30 162
gb|CM000510.1| Homo sapiens chromosome 20, whole genome sho... 30 162
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 30 162
gb|DS990666.1| Homo sapiens SCAF_1112675837326 genomic scaf... 30 162
gb|CH003502.1| Homo sapiens chromosome 7, whole genome shot... 30 162
gb|DS990797.1| Homo sapiens SCAF_1112675837192 genomic scaf... 30 162
gb|DS990802.1| Homo sapiens SCAF_1112675835043 genomic scaf... 30 162
gb|DS990887.1| Homo sapiens SCAF_1112675831474 genomic scaf... 30 162
gb|DS486028.1| Homo sapiens SCAF_1103279188381 genomic scaf... 30 162
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 30 162
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 30 162
gb|CH003454.1| Homo sapiens chromosome 7, whole genome shot... 30 162
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 30 162
gb|CH003467.1| Homo sapiens chromosome 20, whole genome sho... 30 162
tpg|BL000002.1| TPA: Homo sapiens chromosome 7 30 162
emb|CT009680.1| Human chromosome X complete sequence 30 162
ref|NW_927339.1| Homo sapiens chromosome 20 genomic contig,... 30 162
ref|NW_927721.1| Homo sapiens chromosome X genomic contig, ... 30 162
ref|NW_001839071.2| Homo sapiens chromosome 7 genomic conti... 30 162
ref|NW_001842397.1| Homo sapiens chromosome X genomic conti... 30 162
ref|NW_001839139.2| Homo sapiens chromosome 8 genomic conti... 30 162
ref|NW_001838665.1| Homo sapiens chromosome 20 genomic cont... 30 162
ref|NW_923984.1| Homo sapiens chromosome 8 genomic contig, ... 30 162
ref|NW_923640.1| Homo sapiens chromosome 7 genomic contig, ... 30 162
ref|NT_011786.16| Homo sapiens chromosome X genomic contig,... 30 162
ref|NT_008046.16| Homo sapiens chromosome 8 genomic contig,... 30 162
ref|NT_007933.15| Homo sapiens chromosome 7 genomic contig,... 30 162
ref|NT_011362.10| Homo sapiens chromosome 20 genomic contig... 30 162
ref|NT_079596.2| Homo sapiens chromosome 7 genomic contig, ... 30 162
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 30 162
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 30 162
ref|NC_000007.13| Homo sapiens chromosome 7, GRCh37.p2 prim... 30 162
ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 pri... 30 162
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 30 162
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 30 162
ref|AC_000139.1| Homo sapiens chromosome 7, alternate assem... 30 162
ref|AC_000152.1| Homo sapiens chromosome 20, alternate asse... 30 162
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 30 162
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 30 162
ref|AC_000068.1| Homo sapiens chromosome 7, alternate assem... 30 162
ref|AC_000050.1| Homo sapiens chromosome 7, alternate assem... 30 162
ref|AC_000063.1| Homo sapiens chromosome 20, alternate asse... 30 162
gb|GL583030.1| Homo sapiens unplaced genomic scaffold scaff... 30 237
gb|CM000499.1| Homo sapiens chromosome 9, whole genome shot... 30 237
gb|DS990665.1| Homo sapiens SCAF_1112675837347 genomic scaf... 30 237
gb|CH003504.1| Homo sapiens chromosome 9, whole genome shot... 30 237
gb|CH003456.1| Homo sapiens chromosome 9, whole genome shot... 30 237
ref|NW_001839149.2| Homo sapiens chromosome 9 genomic conti... 30 237
ref|NW_924062.1| Homo sapiens chromosome 9 genomic contig, ... 30 237
ref|NW_925173.1| Homo sapiens chromosome 11 genomic contig,... 30 237
ref|NT_008413.18| Homo sapiens chromosome 9 genomic contig,... 30 237
ref|NT_033899.8| Homo sapiens chromosome 11 genomic contig,... 30 237
ref|NW_001838553.2| Homo sapiens chromosome 1 genomic conti... 30 237
ref|NC_000009.11| Homo sapiens chromosome 9, GRCh37.p2 prim... 30 237
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 30 237
ref|AC_000141.1| Homo sapiens chromosome 9, alternate assem... 30 237
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 30 237
ref|AC_000052.1| Homo sapiens chromosome 9, alternate assem... 30 237
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 30 237
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 29 422
gb|GL582981.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|GL583058.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|GL583154.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 29 422
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 29 422
gb|DS990656.1| Homo sapiens SCAF_1112675837090 genomic scaf... 29 422
gb|DS990669.1| Homo sapiens SCAF_1112675837377 genomic scaf... 29 422
gb|DS990686.1| Homo sapiens SCAF_1112675837340 genomic scaf... 29 422
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 29 422
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 29 422
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 29 422
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 29 422
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 29 422
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 29 422
ref|NW_001838990.2| Homo sapiens chromosome 6 genomic conti... 29 422
ref|NW_001838579.2| Homo sapiens chromosome 1 genomic conti... 29 422
ref|NW_001838951.1| Homo sapiens chromosome 5 genomic conti... 29 422
ref|NW_923184.1| Homo sapiens chromosome 6 genomic contig, ... 29 422
ref|NW_921351.1| Homo sapiens chromosome 1 genomic contig, ... 29 422
ref|NW_922729.1| Homo sapiens chromosome 5 genomic contig, ... 29 422
ref|NT_025741.15| Homo sapiens chromosome 6 genomic contig,... 29 422
ref|NT_006713.15| Homo sapiens chromosome 5 genomic contig,... 29 422
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 29 422
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 29 422
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 29 422
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 29 422
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 29 422
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 29 422
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 29 422
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 29 422
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 29 422
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 28 511
gb|GL583033.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|CM000511.1| Homo sapiens chromosome 21, whole genome sho... 28 511
gb|DS990660.1| Homo sapiens SCAF_1112675837341 genomic scaf... 28 511
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 28 511
gb|CH003516.1| Homo sapiens chromosome 21, whole genome sho... 28 511
dbj|BA000005.3| Homo sapiens genomic DNA, chromosome 21q 28 511
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 28 511
gb|CH003468.1| Homo sapiens chromosome 21, whole genome sho... 28 511
ref|NW_927384.1| Homo sapiens chromosome 21 genomic contig,... 28 511
ref|NW_001838863.1| Homo sapiens chromosome 2 genomic conti... 28 511
ref|NW_921618.1| Homo sapiens chromosome 2 genomic contig, ... 28 511
ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig,... 28 511
ref|NT_011515.12| Homo sapiens chromosome 21 genomic contig... 28 511
ref|NC_000021.8| Homo sapiens chromosome 21, GRCh37.p2 prim... 28 511
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 511
ref|AC_000153.1| Homo sapiens chromosome 21, alternate asse... 28 511
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 28 511
ref|AC_000064.1| Homo sapiens chromosome 21, alternate asse... 28 511
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 28 511
gb|GL583076.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583087.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|DS990707.1| Homo sapiens SCAF_1112675837257 genomic scaf... 28 618
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 618
ref|NW_927704.1| Homo sapiens chromosome X genomic contig, ... 28 618
ref|NW_001839064.2| Homo sapiens chromosome 7 genomic conti... 28 618
ref|NW_923574.1| Homo sapiens chromosome 7 genomic contig, ... 28 618
ref|NT_079595.2| Homo sapiens chromosome 7 genomic contig, ... 28 618
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|GL582980.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL582987.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL582988.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL582991.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583005.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583014.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583017.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583025.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583053.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583092.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583103.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583235.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583243.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000508.1| Homo sapiens chromosome 18, whole genome sho... 28 907
gb|DS990657.1| Homo sapiens SCAF_1112675837360 genomic scaf... 28 907
gb|DS990662.1| Homo sapiens SCAF_1112675837338 genomic scaf... 28 907
gb|DS990673.1| Homo sapiens SCAF_1112675837361 genomic scaf... 28 907
gb|DS990693.1| Homo sapiens SCAF_1112675837243 genomic scaf... 28 907
gb|DS990695.1| Homo sapiens SCAF_1112675837320 genomic scaf... 28 907
gb|DS990702.1| Homo sapiens SCAF_1112675837172 genomic scaf... 28 907
gb|DS990706.1| Homo sapiens SCAF_1112675837268 genomic scaf... 28 907
gb|DS990716.1| Homo sapiens SCAF_1112675837355 genomic scaf... 28 907
gb|DS990724.1| Homo sapiens SCAF_1112675837289 genomic scaf... 28 907
gb|DS990751.1| Homo sapiens SCAF_1112675837297 genomic scaf... 28 907
gb|DS990758.1| Homo sapiens SCAF_1112675837376 genomic scaf... 28 907
gb|DS486024.1| Homo sapiens SCAF_1103279188393 genomic scaf... 28 907
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003508.1| Homo sapiens chromosome 13, whole genome sho... 28 907
gb|CH003509.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|CH003513.1| Homo sapiens chromosome 18, whole genome sho... 28 907
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003460.1| Homo sapiens chromosome 13, whole genome sho... 28 907
gb|CH003461.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|CH003465.1| Homo sapiens chromosome 18, whole genome sho... 28 907
ref|NT_086357.2|ENm001 Homo sapiens chromosome 7 sequence, ... 28 907
ref|NW_926794.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NW_926940.1| Homo sapiens chromosome 18 genomic contig,... 28 907
ref|NW_927700.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NW_927129.1| Homo sapiens chromosome 18 genomic contig,... 28 907
ref|NW_001838881.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_001838921.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NW_001842360.1| Homo sapiens chromosome X genomic conti... 28 907
ref|NW_001838954.2| Homo sapiens chromosome 5 genomic conti... 28 907
ref|NW_001838469.1| Homo sapiens chromosome 18 genomic cont... 28 907
ref|NW_001839221.1| Homo sapiens chromosome 9 genomic conti... 28 907
ref|NW_001838537.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_001838594.1| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_001838461.1| Homo sapiens chromosome 18 genomic cont... 28 907
ref|NW_001838578.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_922217.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NW_922784.1| Homo sapiens chromosome 5 genomic contig, ... 28 907
ref|NW_925539.1| Homo sapiens chromosome 14 genomic contig,... 28 907
ref|NW_922073.1| Homo sapiens chromosome 4 genomic contig, ... 28 907
ref|NW_924484.1| Homo sapiens chromosome 9 genomic contig, ... 28 907
ref|NW_922462.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NT_167197.1| Homo sapiens chromosome X genomic contig, ... 28 907
ref|NT_008470.19| Homo sapiens chromosome 9 genomic contig,... 28 907
ref|NT_023133.13| Homo sapiens chromosome 5 genomic contig,... 28 907
ref|NT_016297.16| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig,... 28 907
ref|NT_167186.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NT_025028.14| Homo sapiens chromosome 18 genomic contig... 28 907
ref|NT_010859.14| Homo sapiens chromosome 18 genomic contig... 28 907
ref|NW_001838110.1| Homo sapiens chromosome 14 genomic cont... 28 907
ref|NW_001838901.1| Homo sapiens chromosome 4 genomic conti... 28 907
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 907
ref|NC_000018.9| Homo sapiens chromosome 18, GRCh37.p2 prim... 28 907
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000150.1| Homo sapiens chromosome 18, alternate asse... 28 907
ref|AC_000146.1| Homo sapiens chromosome 14, alternate asse... 28 907
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 907
ref|AC_000061.1| Homo sapiens chromosome 18, alternate asse... 28 907
ref|AC_000057.1| Homo sapiens chromosome 14, alternate asse... 28 907
1_0 1 agaaattggctcgaattgttttaatatta 29
CM000493 150159972 .......c...a.....c......... 150159998
CM000493 112910277 ..t.t..t.t.a...........t..... 112910305
GL583121 352076 .......c...a.....c......... 352102
DS990653 41268487 .......c...a.....c......... 41268461
CH003498 158530383 .......c...a.....c......... 158530409
CH003498 119231221 ..t.t..t.t.a...........t..... 119231249
CH003450 150546887 .......c...a.....c......... 150546913
CH003450 113188876 ..t.t..t.t.a...........t..... 113188904
NW_001838884 41269271 .......c...a.....c......... 41269245
NW_921807 59373147 .......c...a.....c......... 59373173
NW_921807 22127768 ..t.t..t.t.a...........t..... 22127796
NT_005612 59262961 .......c...a.....c......... 59262987
NT_005612 22029182 ..t.t..t.t.a...........t..... 22029210
NC_000003 152767815 .......c...a.....c......... 152767841
NC_000003 115534036 ..t.t..t.t.a...........t..... 115534064
AC_000135 150159760 .......c...a.....c......... 150159786
AC_000135 112909849 ..t.t..t.t.a...........t..... 112909877
AC_000046 151187477 .......c...a.....c......... 151187503
AC_000046 113942098 ..t.t..t.t.a...........t..... 113942126
GL583300 1245512 .......t.g..........c..... 1245537
CM000502 129401026 .......t.g..........c..... 129401001
CH003507 136518190 .......t.g..........c..... 136518165
CH003459 129841973 .......t.g..........c..... 129841948
NW_925395 79757411 .......t.g..........c..... 79757386
NT_009755 9934387 .......t.g..........c..... 9934362
NC_000012 132515010 .......t.g..........c..... 132514985
AC_000144 129401120 .......t.g..........c..... 129401095
AC_000055 132133582 .......t.g..........c..... 132133557
GL582985 34127610 .t.........t....g.......gt... 34127638
GL582985 35111062 ..........g..t...gga........ 35111089
GL583018 11384273 .a..........at...t...g....... 11384245
GL583027 338122 .....ga.....t.........cc..... 338094
GL583299 1095146 ..t...acc..t................. 1095118
CM000497 123003281 .....ga.....t.........cc..... 123003253
CM000497 88336489 ...........tc........a.. 88336512
CM000497 111135724 ........t...a..gca.........c. 111135696
CM000498 131092211 .t.........t....g.......gt... 131092239
CM000498 132089893 ..........g..t...gga........ 132089920
CM000510 32430781 .a..........at...t...g....... 32430809
CM000513 113530039 ..t...acc..t................. 113530011
CM000513 47366703 ...a...gc............... 47366726
CM000513 25556930 .........t.t........a..tgt... 25556902
DS990666 2651556 .....ga.....t.........cc..... 2651584
DS990666 14519113 ........t...a..gca.........c. 14519141
CH003502 118534112 .....ga.....t.........cc..... 118534140
CH003502 84060171 ...........tc........a.. 84060194
CH003502 108683068 ........t...a..gca.........c. 108683096
DS990797 4323823 ..t...acc..t................. 4323795
DS990802 3975793 .t.........t....g.......gt... 3975765
DS990802 2978111 ..........g..t...gga........ 2978084
DS990887 750817 .a..........at...t...g....... 750845
DS486028 2651626 .....ga.....t.........cc..... 2651654
DS486028 14519340 ........t...a..gca.........c. 14519368
CH003503 136259719 .t.........t....g.......gt... 136259747
CH003503 137254681 ..........g..t...gga........ 137254708
CH003518 93828221 ..t...acc..t................. 93828193
CH003518 34249615 ...a...gc............... 34249638
CH003518 17224559 .........t.t........a..tgt... 17224587
CH003454 123914314 .....ga.....t.........cc..... 123914286
CH003454 88904789 ...........tc........a.. 88904812
CH003455 131275168 .t.........t....g.......gt... 131275196
CH003455 132273178 ..........g..t...gga........ 132273205
CH003467 32345041 .a..........at...t...g....... 32345069
BL000002 128123461 .....ga.....t.........cc..... 128123433
BL000002 93268442 ...........tc........a.. 93268465
BL000002 116251592 ........t...a..gca.........c. 116251564
CT009680 123177967 ..t...acc..t................. 123177939
CT009680 49351704 ...a...gc............... 49351727
CT009680 27372192 .........t.t........a..tgt... 27372164
NW_927339 5907164 .a..........at...t...g....... 5907192
NW_927721 4736854 ..t...acc..t................. 4736826
NW_001839071 2651626 .....ga.....t.........cc..... 2651654
NW_001839071 14519340 ........t...a..gca.........c. 14519368
NW_001842397 4323820 ..t...acc..t................. 4323792
NW_001839139 3975679 .t.........t....g.......gt... 3975651
NW_001839139 2978030 ..........g..t...gga........ 2978003
NW_001838665 750768 .a..........at...t...g....... 750796
NW_923984 48914716 .t.........t....g.......gt... 48914744
NW_923984 49912414 ..........g..t...gga........ 49912441
NW_923640 26196945 .....ga.....t.........cc..... 26196917
NW_923640 14336519 ........t...a..gca.........c. 14336491
NT_011786 8414403 ..t...acc..t................. 8414375
NT_008046 49050206 .t.........t....g.......gt... 49050234
NT_008046 50048641 ..........g..t...gga........ 50048668
NT_007933 66674540 .....ga.....t.........cc..... 66674512
NT_007933 31761450 ...........tc........a.. 31761473
NT_007933 54802126 ........t...a..gca.........c. 54802098
NT_011362 5892543 .a..........at...t...g....... 5892571
NT_079596 28061007 .....ga.....t.........cc..... 28060979
NT_079596 16200593 ........t...a..gca.........c. 16200565
NC_000023 124146693 ..t...acc..t................. 124146665
NC_000023 49894588 ...a...gc............... 49894611
NC_000023 27817095 .........t.t........a..tgt... 27817067
NC_000008 135776657 .t.........t....g.......gt... 135776685
NC_000008 136775092 ..........g..t...gga........ 136775119
NC_000007 128641697 .....ga.....t.........cc..... 128641669
NC_000007 93728607 ...........tc........a.. 93728630
NC_000007 116769283 ........t...a..gca.........c. 116769255
NC_000020 35696451 .a..........at...t...g....... 35696479
AC_000155 113529970 ..t...acc..t................. 113529942
AC_000155 47366721 ...a...gc............... 47366744
AC_000155 25556966 .........t.t........a..tgt... 25556938
AC_000140 131092354 .t.........t....g.......gt... 131092382
AC_000140 132090003 ..........g..t...gga........ 132090030
AC_000139 123002888 .....ga.....t.........cc..... 123002860
AC_000139 88336132 ...........tc........a.. 88336155
AC_000139 111135174 ........t...a..gca.........c. 111135146
AC_000152 32430857 .a..........at...t...g....... 32430885
AC_000066 124531279 ..t...acc..t................. 124531251
AC_000066 53963688 ...a...gc............... 53963711
AC_000066 31945577 .........t.t........a..tgt... 31945549
AC_000051 131949398 .t.........t....g.......gt... 131949426
AC_000051 132947096 ..........g..t...gga........ 132947123
AC_000068 128025439 .....ga.....t.........cc..... 128025411
AC_000068 93057780 ...........tc........a.. 93057803
AC_000068 116165025 ........t...a..gca.........c. 116164997
AC_000050 123438194 .....ga.....t.........cc..... 123438166
AC_000050 88426876 ...........tc........a.. 88426899
AC_000050 111577768 ........t...a..gca.........c. 111577740
AC_000063 32404055 .a..........at...t...g....... 32404083
GL583030 9527890 ......a.t..a............. 9527914
CM000499 24556134 ......a.t..a............. 24556158
CM000499 43468816 .t........at..ta.t........... 43468788
DS990665 11311835 ......a.t..a............. 11311811
CH003504 25839643 ......a.t..a............. 25839667
CH003504 46754782 .t........at..ta.t........... 46754754
CH003456 24616843 ......a.t..a............. 24616867
CH003456 41702111 .t........at..ta.t........... 41702083
NW_001839149 11311633 ......a.t..a............. 11311609
NW_924062 24415227 ......a.t..a............. 24415251
NW_925173 9822009 ...t.......t...........t. 9821985
NT_008413 24598116 ......a.t..a............. 24598140
NT_033899 3346182 ...t.......t...........t. 3346158
NW_001838553 1861763 ....c....t.........t..... 1861739
NC_000009 24608116 ......a.t..a............. 24608140
NC_000009 73646550 .t........at..ta.t........... 73646522
NC_000011 99783766 ...t.......t...........t. 99783742
AC_000141 24556588 ......a.t..a............. 24556612
AC_000141 43469450 .t........at..ta.t........... 43469422
AC_000133 215331481 ....c....t.........t..... 215331505
AC_000133 70455220 .........ca..t...a...g...... 70455193
AC_000133 48138426 .a...a...t.tc..........t..... 48138398
AC_000133 110921693 ...t..at....a............ga.. 110921665
AC_000133 188307199 ..t.t...c...a.g.........g.... 188307227
AC_000052 24530708 ......a.t..a............. 24530732
AC_000052 44218862 .t........at..ta.t........... 44218834
AC_000054 96953109 ...t.......t...........t. 96953085
CM000491 70455063 .........ca..t...a...g...... 70455036
CM000491 48138276 .a...a...t.tc..........t..... 48138248
CM000491 110921203 ...t..at....a............ga.. 110921175
CM000491 188306376 ..t.t...c...a.g.........g.... 188306404
GL582981 6294875 ........ta..tc...........t.. 6294902
GL583058 8341647 .........ca..t...a...g...... 8341674
GL583154 4468811 ..tt..a.t..a................ 4468784
CM000495 80992244 ..tt..a.t..a................ 80992271
CM000495 160084878 .c.....ct...ag...a........... 160084906
CM000496 107484443 ........ta..tc...........t.. 107484470
DS990656 47638666 ........ta..tc...........t.. 47638639
DS990669 11339096 .........ca..t...a...g...... 11339123
DS990686 15074012 ..tt..a.t..a................ 15074039
CH003496 65842776 .........ca..t...a...g...... 65842803
CH003496 113188037 ...t..at....a............ga.. 113188009
CH003496 192727552 ..t.t...c...a.g.........g.... 192727580
CH003500 85755231 ..tt..a.t..a................ 85755258
CH003500 59557205 ......g..........g.c.... 59557228
CH003500 170879574 .c.....ct...ag...a........... 170879602
CH003501 110426577 ........ta..tc...........t.. 110426550
CH003448 71520656 .........ca..t...a...g...... 71520629
CH003448 49246033 .a...a...t.tc..........t..... 49246005
CH003448 112054934 ...t..at....a............ga.. 112054906
CH003448 190363738 ..t.t...c...a.g.........g.... 190363766
CH003452 81187881 ..tt..a.t..a................ 81187908
CH003452 162342228 .c.....ct...ag...a........... 162342256
CH003453 106803082 ........ta..tc...........t.. 106803109
NW_001838990 47638213 ........ta..tc...........t.. 47638186
NW_001838579 11339502 .........ca..t...a...g...... 11339529
NW_001838951 15073824 ..tt..a.t..a................ 15073851
NW_923184 42733720 ........ta..tc...........t.. 42733747
NW_921351 46493924 .........ca..t...a...g...... 46493897
NW_921351 24166862 .a...a...t.tc..........t..... 24166834
NW_922729 15082017 ..tt..a.t..a................ 15082044
NT_025741 14087981 ........ta..tc...........t.. 14088008
NT_006713 36384252 ..tt..a.t..a................ 36384279
NT_032977 42315776 .........ca..t...a...g...... 42315749
NT_032977 19992055 .a...a...t.tc..........t..... 19992027
NT_032977 83033759 ...t..at....a............ga.. 83033731
NC_000001 72343858 .........ca..t...a...g...... 72343831
NC_000001 50020137 .a...a...t.tc..........t..... 50020109
NC_000001 113061841 ...t..at....a............ga.. 113061813
NC_000001 217632238 ..t.t...c...a.g.........g.... 217632266
NC_000006 109918524 ........ta..tc...........t.. 109918551
NC_000005 85789893 ..tt..a.t..a................ 85789920
NC_000005 164985188 .c.....ct...ag...a........... 164985216
AC_000138 107484685 ........ta..tc...........t.. 107484712
AC_000137 80991933 ..tt..a.t..a................ 80991960
AC_000137 160084625 .c.....ct...ag...a........... 160084653
AC_000049 110665116 ........ta..tc...........t.. 110665143
AC_000048 81682173 ..tt..a.t..a................ 81682200
AC_000048 161023182 .c.....ct...ag...a........... 161023210
AC_000044 70633066 .........ca..t...a...g...... 70633039
AC_000044 48306004 .a...a...t.tc..........t..... 48305976
AC_000044 111292369 ...t..at....a............ga.. 111292341
AC_000044 190856084 ..t.t...c...a.g.........g.... 190856112
CM000492 194498187 ....ga...gc............... 194498212
GL583033 6913269 ....ga...gc............... 6913244
CM000511 33294759 ............g......g.cc... 33294784
DS990660 28054560 ....ga...gc............... 28054585
CH003497 207598960 ....ga...gc............... 207598935
CH003516 34110813 ............g......g.cc... 34110838
BA000005 33338084 ............g......g.cc... 33338109
CH003449 193708843 ....ga...gc............... 193708868
CH003468 32533385 ............g......g.cc... 32533410
NW_927384 32513035 ............g......g.cc... 32513060
NW_001838863 28054159 ....ga...gc............... 28054184
NW_921618 7316165 ....ga...gc............... 7316190
NT_005403 52858937 ....ga...gc............... 52858962
NT_011515 4909179 ............g......g.cc... 4909204
NC_000021 47914738 ............g......g.cc... 47914763
NC_000002 202649519 ....ga...gc............... 202649544
AC_000153 33294693 ............g......g.cc... 33294718
AC_000134 194497853 ....ga...gc............... 194497878
AC_000064 33027912 ............g......g.cc... 33027937
AC_000045 196401635 ....ga...gc............... 196401660
GL583076 1387334 ...........aa....r..... 1387356
GL583087 3914105 ...........tc........a.. 3914128
DS990707 5116515 ...........tc........a.. 5116492
CH003470 51163126 ...a...gc............... 51163149
CH003470 28645326 .........t.t........a..tgt... 28645298
NW_927704 528513 ...a...gc............... 528536
NW_001839064 5116578 ...........tc........a.. 5116555
NW_923574 16965913 ...........tc........a.. 16965936
NT_079595 18958992 ...........tc........a.. 18959015
CM000494 35640512 .....g..c.ag...g...........g. 35640540
CM000494 181267261 ...c.....tga..........c.a.... 181267233
GL582980 38361542 .c.....ct...ag...a........... 38361570
GL582987 26198515 .a..........tt..cc........g.. 26198487
GL582988 23546193 .........t.t........a..tgt... 23546165
GL582991 9894433 ..t.t..t.t.a...........t..... 9894405
GL583005 7397548 ...t..at....a............ga.. 7397576
GL583014 10411618 ........t...a..gca.........c. 10411590
GL583017 14094198 ...c.....tga..........c.a.... 14094170
GL583025 2595102 .t........at..ta.t........... 2595074
GL583053 6411995 ..t.t...c...a.g.........g.... 6412023
GL583092 5723521 .........ag.ct...t.....t..... 5723549
GL583103 4444974 .....g..c.ag...g...........g. 4445002
GL583235 2155272 .a...a...t.tc..........t..... 2155300
GL583243 1190726 .a...a.t...g....a.........a.. 1190754
CM000508 1099822 .a...a.t...g....a.........a.. 1099794
CM000508 67821965 .a..........tt..cc........g.. 67821937
DS990657 45748590 ...c.....tga..........c.a.... 45748562
DS990662 25748717 ..t.t..t.t.a...........t..... 25748689
DS990673 19347896 .........t.t........a..tgt... 19347868
DS990693 10377708 .c.....ct...ag...a........... 10377680
DS990695 18905508 .a..........tt..cc........g.. 18905480
DS990702 2640875 .t........at..ta.t........... 2640847
DS990706 5621313 ..t.t...c...a.g.........g.... 5621285
DS990716 4171068 ...t..at....a............ga.. 4171040
DS990724 1088182 .a...a.t...g....a.........a.. 1088154
DS990751 814211 .a...a...t.tc..........t..... 814239
DS990758 4474886 .....g..c.ag...g...........g. 4474914
DS486024 2262328 .........ag.ct...t.....t..... 2262300
DS486024 25748695 ..t.t..t.t.a...........t..... 25748667
CH003499 37390926 .....g..c.ag...g...........g. 37390954
CH003499 47388494 .........ta.c....c.a....c.... 47388466
CH003508 15918601 .....a.a...tt...g.........g.. 15918629
CH003509 2144990 .........ag.ct...t.....t..... 2144962
CH003513 2978954 .a...a.t...g....a.........a.. 2978926
CH003513 73745828 .a..........tt..cc........g.. 73745800
CH003451 35949088 .....g..c.ag...g...........g. 35949116
CH003451 182356906 ...c.....tga..........c.a.... 182356878
CH003460 14509399 .....a.a...tt...g.........g.. 14509427
CH003461 2263775 .........ag.ct...t.....t..... 2263747
CH003465 1008078 .a...a.t...g....a.........a.. 1008050
CH003465 66782328 .a..........tt..cc........g.. 66782300
NT_086357 958763 ........t...a..gca.........c. 958735
NW_926794 11021844 ..t.t...c...a.g.........g.... 11021872
NW_926940 1014343 .a...a.t...g....a.........a.. 1014315
NW_927700 26343859 .........t.t........a..tgt... 26343831
NW_927129 5988392 .a..........tt..cc........g.. 5988364
NW_001838881 4760225 ..t.t..t.t.a...........t..... 4760197
NW_001838921 45748141 ...c.....tga..........c.a.... 45748113
NW_001842360 19347927 .........t.t........a..tgt... 19347899
NW_001838954 10377700 .c.....ct...ag...a........... 10377672
NW_001838469 18905673 .a..........tt..cc........g.. 18905645
NW_001839221 2640987 .t........at..ta.t........... 2640959
NW_001838537 5621485 ..t.t...c...a.g.........g.... 5621457
NW_001838594 4170999 ...t..at....a............ga.. 4170971
NW_001838461 1088198 .a...a.t...g....a.........a.. 1088170
NW_001838578 814212 .a...a...t.tc..........t..... 814240
NW_922217 65097587 ...c.....tga..........c.a.... 65097559
NW_922784 38651198 .c.....ct...ag...a........... 38651226
NW_925539 2261353 .........ag.ct...t.....t..... 2261325
NW_922073 26880105 .....g..c.ag...g...........g. 26880133
NW_924484 2598898 .t........at..ta.t........... 2598870
NW_922462 4010580 ...t..at....a............ga.. 4010552
NT_167197 25698857 .........t.t........a..tgt... 25698829
NT_008470 2811082 .t........at..ta.t........... 2811054
NT_023133 9796461 .c.....ct...ag...a........... 9796489
NT_016297 3473158 .....g..c.ag...g...........g. 3473186
NT_016354 110059169 ...c.....tga..........c.a.... 110059141
NT_167186 11150017 ..t.t...c...a.g.........g.... 11150045
NT_025028 18880837 .a..........tt..cc........g.. 18880809
NT_010859 1129728 .a...a.t...g....a.........a.. 1129700
NW_001838110 2262328 .........ag.ct...t.....t..... 2262300
NW_001838901 4474764 .....g..c.ag...g...........g. 4474792
NC_000004 36313796 .....g..c.ag...g...........g. 36313824
NC_000004 185511448 ...c.....tga..........c.a.... 185511420
NC_000018 1139728 .a...a.t...g....a.........a.. 1139700
NC_000018 71089973 .a..........tt..cc........g.. 71089945
AC_000136 35640098 .....g..c.ag...g...........g. 35640126
AC_000136 181265902 ...c.....tga..........c.a.... 181265874
AC_000150 1099838 .a...a.t...g....a.........a.. 1099810
AC_000150 67822324 .a..........tt..cc........g.. 67822296
AC_000146 2573504 .........ag.ct...t.....t..... 2573476
AC_000047 36753363 .....g..c.ag...g...........g. 36753391
AC_000047 182840108 ...c.....tga..........c.a.... 182840080
AC_000061 1014343 .a...a.t...g....a.........a.. 1014315
AC_000061 67954834 .a..........tt..cc........g.. 67954806
AC_000057 2319231 .........ag.ct...t.....t..... 2319203
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 60,347,311
Number of extensions: 319
Number of successful extensions: 319
Number of sequences better than 1000.0: 218
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 319
Length of query: 29
Length of database: 31,910,071,267
Length adjustment: 23
Effective length of query: 6
Effective length of database: 31,910,036,882
Effective search space: 191460221292
Effective search space used: 191460221292
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)