BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1775
         (29 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000493.1|  Homo sapiens chromosome 3, whole genome shot...    32      35
gb|GL583121.1|  Homo sapiens unplaced genomic scaffold scaff...    32      35
gb|DS990653.1|  Homo sapiens SCAF_1112675837330 genomic scaf...    32      35
gb|CH003498.1|  Homo sapiens chromosome 3, whole genome shot...    32      35
gb|CH003450.1|  Homo sapiens chromosome 3, whole genome shot...    32      35
ref|NW_001838884.2|  Homo sapiens chromosome 3 genomic conti...    32      35
ref|NW_921807.1|  Homo sapiens chromosome 3 genomic contig, ...    32      35
ref|NT_005612.16|  Homo sapiens chromosome 3 genomic contig,...    32      35
ref|NC_000003.11|  Homo sapiens chromosome 3, GRCh37.p2 prim...    32      35
ref|AC_000135.1|  Homo sapiens chromosome 3, alternate assem...    32      35
ref|AC_000046.1|  Homo sapiens chromosome 3, alternate assem...    32      35
gb|GL583300.1|  Homo sapiens unplaced genomic scaffold scaff...    31      91
gb|CM000502.1|  Homo sapiens chromosome 12, whole genome sho...    31      91
gb|CH003507.1|  Homo sapiens chromosome 12, whole genome sho...    31      91
gb|CH003459.1|  Homo sapiens chromosome 12, whole genome sho...    31      91
ref|NW_925395.1|  Homo sapiens chromosome 12 genomic contig,...    31      91
ref|NT_009755.19|  Homo sapiens chromosome 12 genomic contig...    31      91
ref|NC_000012.11|  Homo sapiens chromosome 12, GRCh37.p2 pri...    31      91
ref|AC_000144.1|  Homo sapiens chromosome 12, alternate asse...    31      91
ref|AC_000055.1|  Homo sapiens chromosome 12, alternate asse...    31      91
gb|GL582985.1|  Homo sapiens unplaced genomic scaffold scaff...    30     162
gb|GL583018.1|  Homo sapiens unplaced genomic scaffold scaff...    30     162
gb|GL583027.1|  Homo sapiens unplaced genomic scaffold scaff...    30     162
gb|GL583299.1|  Homo sapiens unplaced genomic scaffold scaff...    30     162
gb|CM000497.1|  Homo sapiens chromosome 7, whole genome shot...    30     162
gb|CM000498.1|  Homo sapiens chromosome 8, whole genome shot...    30     162
gb|CM000510.1|  Homo sapiens chromosome 20, whole genome sho...    30     162
gb|CM000513.1|  Homo sapiens chromosome X, whole genome shot...    30     162
gb|DS990666.1|  Homo sapiens SCAF_1112675837326 genomic scaf...    30     162
gb|CH003502.1|  Homo sapiens chromosome 7, whole genome shot...    30     162
gb|DS990797.1|  Homo sapiens SCAF_1112675837192 genomic scaf...    30     162
gb|DS990802.1|  Homo sapiens SCAF_1112675835043 genomic scaf...    30     162
gb|DS990887.1|  Homo sapiens SCAF_1112675831474 genomic scaf...    30     162
gb|DS486028.1|  Homo sapiens SCAF_1103279188381 genomic scaf...    30     162
gb|CH003503.1|  Homo sapiens chromosome 8, whole genome shot...    30     162
gb|CH003518.1|  Homo sapiens chromosome X, whole genome shot...    30     162
gb|CH003454.1|  Homo sapiens chromosome 7, whole genome shot...    30     162
gb|CH003455.1|  Homo sapiens chromosome 8, whole genome shot...    30     162
gb|CH003467.1|  Homo sapiens chromosome 20, whole genome sho...    30     162
tpg|BL000002.1|  TPA: Homo sapiens chromosome 7                    30     162
emb|CT009680.1|  Human chromosome X complete sequence              30     162
ref|NW_927339.1|  Homo sapiens chromosome 20 genomic contig,...    30     162
ref|NW_927721.1|  Homo sapiens chromosome X genomic contig, ...    30     162
ref|NW_001839071.2|  Homo sapiens chromosome 7 genomic conti...    30     162
ref|NW_001842397.1|  Homo sapiens chromosome X genomic conti...    30     162
ref|NW_001839139.2|  Homo sapiens chromosome 8 genomic conti...    30     162
ref|NW_001838665.1|  Homo sapiens chromosome 20 genomic cont...    30     162
ref|NW_923984.1|  Homo sapiens chromosome 8 genomic contig, ...    30     162
ref|NW_923640.1|  Homo sapiens chromosome 7 genomic contig, ...    30     162
ref|NT_011786.16|  Homo sapiens chromosome X genomic contig,...    30     162
ref|NT_008046.16|  Homo sapiens chromosome 8 genomic contig,...    30     162
ref|NT_007933.15|  Homo sapiens chromosome 7 genomic contig,...    30     162
ref|NT_011362.10|  Homo sapiens chromosome 20 genomic contig...    30     162
ref|NT_079596.2|  Homo sapiens chromosome 7 genomic contig, ...    30     162
ref|NC_000023.10|  Homo sapiens chromosome X, GRCh37.p2 prim...    30     162
ref|NC_000008.10|  Homo sapiens chromosome 8, GRCh37.p2 prim...    30     162
ref|NC_000007.13|  Homo sapiens chromosome 7, GRCh37.p2 prim...    30     162
ref|NC_000020.10|  Homo sapiens chromosome 20, GRCh37.p2 pri...    30     162
ref|AC_000155.1|  Homo sapiens chromosome X, alternate assem...    30     162
ref|AC_000140.1|  Homo sapiens chromosome 8, alternate assem...    30     162
ref|AC_000139.1|  Homo sapiens chromosome 7, alternate assem...    30     162
ref|AC_000152.1|  Homo sapiens chromosome 20, alternate asse...    30     162
ref|AC_000066.1|  Homo sapiens chromosome X, alternate assem...    30     162
ref|AC_000051.1|  Homo sapiens chromosome 8, alternate assem...    30     162
ref|AC_000068.1|  Homo sapiens chromosome 7, alternate assem...    30     162
ref|AC_000050.1|  Homo sapiens chromosome 7, alternate assem...    30     162
ref|AC_000063.1|  Homo sapiens chromosome 20, alternate asse...    30     162
gb|GL583030.1|  Homo sapiens unplaced genomic scaffold scaff...    30     237
gb|CM000499.1|  Homo sapiens chromosome 9, whole genome shot...    30     237
gb|DS990665.1|  Homo sapiens SCAF_1112675837347 genomic scaf...    30     237
gb|CH003504.1|  Homo sapiens chromosome 9, whole genome shot...    30     237
gb|CH003456.1|  Homo sapiens chromosome 9, whole genome shot...    30     237
ref|NW_001839149.2|  Homo sapiens chromosome 9 genomic conti...    30     237
ref|NW_924062.1|  Homo sapiens chromosome 9 genomic contig, ...    30     237
ref|NW_925173.1|  Homo sapiens chromosome 11 genomic contig,...    30     237
ref|NT_008413.18|  Homo sapiens chromosome 9 genomic contig,...    30     237
ref|NT_033899.8|  Homo sapiens chromosome 11 genomic contig,...    30     237
ref|NW_001838553.2|  Homo sapiens chromosome 1 genomic conti...    30     237
ref|NC_000009.11|  Homo sapiens chromosome 9, GRCh37.p2 prim...    30     237
ref|NC_000011.9|  Homo sapiens chromosome 11, GRCh37.p2 prim...    30     237
ref|AC_000141.1|  Homo sapiens chromosome 9, alternate assem...    30     237
ref|AC_000133.1|  Homo sapiens chromosome 1, alternate assem...    30     237
ref|AC_000052.1|  Homo sapiens chromosome 9, alternate assem...    30     237
ref|AC_000054.1|  Homo sapiens chromosome 11, alternate asse...    30     237
gb|CM000491.1|  Homo sapiens chromosome 1, whole genome shot...    29     422
gb|GL582981.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|GL583058.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|GL583154.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|CM000495.1|  Homo sapiens chromosome 5, whole genome shot...    29     422
gb|CM000496.1|  Homo sapiens chromosome 6, whole genome shot...    29     422
gb|DS990656.1|  Homo sapiens SCAF_1112675837090 genomic scaf...    29     422
gb|DS990669.1|  Homo sapiens SCAF_1112675837377 genomic scaf...    29     422
gb|DS990686.1|  Homo sapiens SCAF_1112675837340 genomic scaf...    29     422
gb|CH003496.1|  Homo sapiens chromosome 1, whole genome shot...    29     422
gb|CH003500.1|  Homo sapiens chromosome 5, whole genome shot...    29     422
gb|CH003501.1|  Homo sapiens chromosome 6, whole genome shot...    29     422
gb|CH003448.1|  Homo sapiens chromosome 1, whole genome shot...    29     422
gb|CH003452.1|  Homo sapiens chromosome 5, whole genome shot...    29     422
gb|CH003453.1|  Homo sapiens chromosome 6, whole genome shot...    29     422
ref|NW_001838990.2|  Homo sapiens chromosome 6 genomic conti...    29     422
ref|NW_001838579.2|  Homo sapiens chromosome 1 genomic conti...    29     422
ref|NW_001838951.1|  Homo sapiens chromosome 5 genomic conti...    29     422
ref|NW_923184.1|  Homo sapiens chromosome 6 genomic contig, ...    29     422
ref|NW_921351.1|  Homo sapiens chromosome 1 genomic contig, ...    29     422
ref|NW_922729.1|  Homo sapiens chromosome 5 genomic contig, ...    29     422
ref|NT_025741.15|  Homo sapiens chromosome 6 genomic contig,...    29     422
ref|NT_006713.15|  Homo sapiens chromosome 5 genomic contig,...    29     422
ref|NT_032977.9|  Homo sapiens chromosome 1 genomic contig, ...    29     422
ref|NC_000001.10|  Homo sapiens chromosome 1, GRCh37.p2 prim...    29     422
ref|NC_000006.11|  Homo sapiens chromosome 6, GRCh37.p2 prim...    29     422
ref|NC_000005.9|  Homo sapiens chromosome 5, GRCh37.p2 prima...    29     422
ref|AC_000138.1|  Homo sapiens chromosome 6, alternate assem...    29     422
ref|AC_000137.1|  Homo sapiens chromosome 5, alternate assem...    29     422
ref|AC_000049.1|  Homo sapiens chromosome 6, alternate assem...    29     422
ref|AC_000048.1|  Homo sapiens chromosome 5, alternate assem...    29     422
ref|AC_000044.1|  Homo sapiens chromosome 1, alternate assem...    29     422
gb|CM000492.1|  Homo sapiens chromosome 2, whole genome shot...    28     511
gb|GL583033.1|  Homo sapiens unplaced genomic scaffold scaff...    28     511
gb|CM000511.1|  Homo sapiens chromosome 21, whole genome sho...    28     511
gb|DS990660.1|  Homo sapiens SCAF_1112675837341 genomic scaf...    28     511
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    28     511
gb|CH003516.1|  Homo sapiens chromosome 21, whole genome sho...    28     511
dbj|BA000005.3|  Homo sapiens genomic DNA, chromosome 21q          28     511
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    28     511
gb|CH003468.1|  Homo sapiens chromosome 21, whole genome sho...    28     511
ref|NW_927384.1|  Homo sapiens chromosome 21 genomic contig,...    28     511
ref|NW_001838863.1|  Homo sapiens chromosome 2 genomic conti...    28     511
ref|NW_921618.1|  Homo sapiens chromosome 2 genomic contig, ...    28     511
ref|NT_005403.17|  Homo sapiens chromosome 2 genomic contig,...    28     511
ref|NT_011515.12|  Homo sapiens chromosome 21 genomic contig...    28     511
ref|NC_000021.8|  Homo sapiens chromosome 21, GRCh37.p2 prim...    28     511
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    28     511
ref|AC_000153.1|  Homo sapiens chromosome 21, alternate asse...    28     511
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    28     511
ref|AC_000064.1|  Homo sapiens chromosome 21, alternate asse...    28     511
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    28     511
gb|GL583076.1|  Homo sapiens unplaced genomic scaffold scaff...    28     618
gb|GL583087.1|  Homo sapiens unplaced genomic scaffold scaff...    28     618
gb|DS990707.1|  Homo sapiens SCAF_1112675837257 genomic scaf...    28     618
gb|CH003470.1|  Homo sapiens chromosome X, whole genome shot...    28     618
ref|NW_927704.1|  Homo sapiens chromosome X genomic contig, ...    28     618
ref|NW_001839064.2|  Homo sapiens chromosome 7 genomic conti...    28     618
ref|NW_923574.1|  Homo sapiens chromosome 7 genomic contig, ...    28     618
ref|NT_079595.2|  Homo sapiens chromosome 7 genomic contig, ...    28     618
gb|CM000494.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
gb|GL582980.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL582987.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL582988.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL582991.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583005.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583014.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583017.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583025.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583053.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583092.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583103.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583235.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|GL583243.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|CM000508.1|  Homo sapiens chromosome 18, whole genome sho...    28     907
gb|DS990657.1|  Homo sapiens SCAF_1112675837360 genomic scaf...    28     907
gb|DS990662.1|  Homo sapiens SCAF_1112675837338 genomic scaf...    28     907
gb|DS990673.1|  Homo sapiens SCAF_1112675837361 genomic scaf...    28     907
gb|DS990693.1|  Homo sapiens SCAF_1112675837243 genomic scaf...    28     907
gb|DS990695.1|  Homo sapiens SCAF_1112675837320 genomic scaf...    28     907
gb|DS990702.1|  Homo sapiens SCAF_1112675837172 genomic scaf...    28     907
gb|DS990706.1|  Homo sapiens SCAF_1112675837268 genomic scaf...    28     907
gb|DS990716.1|  Homo sapiens SCAF_1112675837355 genomic scaf...    28     907
gb|DS990724.1|  Homo sapiens SCAF_1112675837289 genomic scaf...    28     907
gb|DS990751.1|  Homo sapiens SCAF_1112675837297 genomic scaf...    28     907
gb|DS990758.1|  Homo sapiens SCAF_1112675837376 genomic scaf...    28     907
gb|DS486024.1|  Homo sapiens SCAF_1103279188393 genomic scaf...    28     907
gb|CH003499.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
gb|CH003508.1|  Homo sapiens chromosome 13, whole genome sho...    28     907
gb|CH003509.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
gb|CH003513.1|  Homo sapiens chromosome 18, whole genome sho...    28     907
gb|CH003451.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
gb|CH003460.1|  Homo sapiens chromosome 13, whole genome sho...    28     907
gb|CH003461.1|  Homo sapiens chromosome 14, whole genome sho...    28     907
gb|CH003465.1|  Homo sapiens chromosome 18, whole genome sho...    28     907
ref|NT_086357.2|ENm001  Homo sapiens chromosome 7 sequence, ...    28     907
ref|NW_926794.1|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NW_926940.1|  Homo sapiens chromosome 18 genomic contig,...    28     907
ref|NW_927700.1|  Homo sapiens chromosome X genomic contig, ...    28     907
ref|NW_927129.1|  Homo sapiens chromosome 18 genomic contig,...    28     907
ref|NW_001838881.2|  Homo sapiens chromosome 3 genomic conti...    28     907
ref|NW_001838921.1|  Homo sapiens chromosome 4 genomic conti...    28     907
ref|NW_001842360.1|  Homo sapiens chromosome X genomic conti...    28     907
ref|NW_001838954.2|  Homo sapiens chromosome 5 genomic conti...    28     907
ref|NW_001838469.1|  Homo sapiens chromosome 18 genomic cont...    28     907
ref|NW_001839221.1|  Homo sapiens chromosome 9 genomic conti...    28     907
ref|NW_001838537.2|  Homo sapiens chromosome 1 genomic conti...    28     907
ref|NW_001838594.1|  Homo sapiens chromosome 1 genomic conti...    28     907
ref|NW_001838461.1|  Homo sapiens chromosome 18 genomic cont...    28     907
ref|NW_001838578.2|  Homo sapiens chromosome 1 genomic conti...    28     907
ref|NW_922217.1|  Homo sapiens chromosome 4 genomic contig, ...    28     907
ref|NW_922784.1|  Homo sapiens chromosome 5 genomic contig, ...    28     907
ref|NW_925539.1|  Homo sapiens chromosome 14 genomic contig,...    28     907
ref|NW_922073.1|  Homo sapiens chromosome 4 genomic contig, ...    28     907
ref|NW_924484.1|  Homo sapiens chromosome 9 genomic contig, ...    28     907
ref|NW_922462.1|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NT_167197.1|  Homo sapiens chromosome X genomic contig, ...    28     907
ref|NT_008470.19|  Homo sapiens chromosome 9 genomic contig,...    28     907
ref|NT_023133.13|  Homo sapiens chromosome 5 genomic contig,...    28     907
ref|NT_016297.16|  Homo sapiens chromosome 4 genomic contig,...    28     907
ref|NT_016354.19|  Homo sapiens chromosome 4 genomic contig,...    28     907
ref|NT_167186.1|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NT_025028.14|  Homo sapiens chromosome 18 genomic contig...    28     907
ref|NT_010859.14|  Homo sapiens chromosome 18 genomic contig...    28     907
ref|NW_001838110.1|  Homo sapiens chromosome 14 genomic cont...    28     907
ref|NW_001838901.1|  Homo sapiens chromosome 4 genomic conti...    28     907
ref|NC_000004.11|  Homo sapiens chromosome 4, GRCh37.p2 prim...    28     907
ref|NC_000018.9|  Homo sapiens chromosome 18, GRCh37.p2 prim...    28     907
ref|AC_000136.1|  Homo sapiens chromosome 4, alternate assem...    28     907
ref|AC_000150.1|  Homo sapiens chromosome 18, alternate asse...    28     907
ref|AC_000146.1|  Homo sapiens chromosome 14, alternate asse...    28     907
ref|AC_000047.1|  Homo sapiens chromosome 4, alternate assem...    28     907
ref|AC_000061.1|  Homo sapiens chromosome 18, alternate asse...    28     907
ref|AC_000057.1|  Homo sapiens chromosome 14, alternate asse...    28     907
1_0          1         agaaattggctcgaattgttttaatatta 29
CM000493     150159972  .......c...a.....c.........  150159998
CM000493     112910277 ..t.t..t.t.a...........t..... 112910305
GL583121     352076     .......c...a.....c.........  352102
DS990653     41268487   .......c...a.....c.........  41268461
CH003498     158530383  .......c...a.....c.........  158530409
CH003498     119231221 ..t.t..t.t.a...........t..... 119231249
CH003450     150546887  .......c...a.....c.........  150546913
CH003450     113188876 ..t.t..t.t.a...........t..... 113188904
NW_001838884 41269271   .......c...a.....c.........  41269245
NW_921807    59373147   .......c...a.....c.........  59373173
NW_921807    22127768  ..t.t..t.t.a...........t..... 22127796
NT_005612    59262961   .......c...a.....c.........  59262987
NT_005612    22029182  ..t.t..t.t.a...........t..... 22029210
NC_000003    152767815  .......c...a.....c.........  152767841
NC_000003    115534036 ..t.t..t.t.a...........t..... 115534064
AC_000135    150159760  .......c...a.....c.........  150159786
AC_000135    112909849 ..t.t..t.t.a...........t..... 112909877
AC_000046    151187477  .......c...a.....c.........  151187503
AC_000046    113942098 ..t.t..t.t.a...........t..... 113942126
GL583300     1245512     .......t.g..........c.....  1245537
CM000502     129401026   .......t.g..........c.....  129401001
CH003507     136518190   .......t.g..........c.....  136518165
CH003459     129841973   .......t.g..........c.....  129841948
NW_925395    79757411    .......t.g..........c.....  79757386
NT_009755    9934387     .......t.g..........c.....  9934362
NC_000012    132515010   .......t.g..........c.....  132514985
AC_000144    129401120   .......t.g..........c.....  129401095
AC_000055    132133582   .......t.g..........c.....  132133557
GL582985     34127610  .t.........t....g.......gt... 34127638
GL582985     35111062   ..........g..t...gga........ 35111089
GL583018     11384273  .a..........at...t...g....... 11384245
GL583027     338122    .....ga.....t.........cc..... 338094
GL583299     1095146   ..t...acc..t................. 1095118
CM000497     123003281 .....ga.....t.........cc..... 123003253
CM000497     88336489  ...........tc........a..      88336512
CM000497     111135724 ........t...a..gca.........c. 111135696
CM000498     131092211 .t.........t....g.......gt... 131092239
CM000498     132089893  ..........g..t...gga........ 132089920
CM000510     32430781  .a..........at...t...g....... 32430809
CM000513     113530039 ..t...acc..t................. 113530011
CM000513     47366703      ...a...gc...............  47366726
CM000513     25556930  .........t.t........a..tgt... 25556902
DS990666     2651556   .....ga.....t.........cc..... 2651584
DS990666     14519113  ........t...a..gca.........c. 14519141
CH003502     118534112 .....ga.....t.........cc..... 118534140
CH003502     84060171  ...........tc........a..      84060194
CH003502     108683068 ........t...a..gca.........c. 108683096
DS990797     4323823   ..t...acc..t................. 4323795
DS990802     3975793   .t.........t....g.......gt... 3975765
DS990802     2978111    ..........g..t...gga........ 2978084
DS990887     750817    .a..........at...t...g....... 750845
DS486028     2651626   .....ga.....t.........cc..... 2651654
DS486028     14519340  ........t...a..gca.........c. 14519368
CH003503     136259719 .t.........t....g.......gt... 136259747
CH003503     137254681  ..........g..t...gga........ 137254708
CH003518     93828221  ..t...acc..t................. 93828193
CH003518     34249615      ...a...gc...............  34249638
CH003518     17224559  .........t.t........a..tgt... 17224587
CH003454     123914314 .....ga.....t.........cc..... 123914286
CH003454     88904789  ...........tc........a..      88904812
CH003455     131275168 .t.........t....g.......gt... 131275196
CH003455     132273178  ..........g..t...gga........ 132273205
CH003467     32345041  .a..........at...t...g....... 32345069
BL000002     128123461 .....ga.....t.........cc..... 128123433
BL000002     93268442  ...........tc........a..      93268465
BL000002     116251592 ........t...a..gca.........c. 116251564
CT009680     123177967 ..t...acc..t................. 123177939
CT009680     49351704      ...a...gc...............  49351727
CT009680     27372192  .........t.t........a..tgt... 27372164
NW_927339    5907164   .a..........at...t...g....... 5907192
NW_927721    4736854   ..t...acc..t................. 4736826
NW_001839071 2651626   .....ga.....t.........cc..... 2651654
NW_001839071 14519340  ........t...a..gca.........c. 14519368
NW_001842397 4323820   ..t...acc..t................. 4323792
NW_001839139 3975679   .t.........t....g.......gt... 3975651
NW_001839139 2978030    ..........g..t...gga........ 2978003
NW_001838665 750768    .a..........at...t...g....... 750796
NW_923984    48914716  .t.........t....g.......gt... 48914744
NW_923984    49912414   ..........g..t...gga........ 49912441
NW_923640    26196945  .....ga.....t.........cc..... 26196917
NW_923640    14336519  ........t...a..gca.........c. 14336491
NT_011786    8414403   ..t...acc..t................. 8414375
NT_008046    49050206  .t.........t....g.......gt... 49050234
NT_008046    50048641   ..........g..t...gga........ 50048668
NT_007933    66674540  .....ga.....t.........cc..... 66674512
NT_007933    31761450  ...........tc........a..      31761473
NT_007933    54802126  ........t...a..gca.........c. 54802098
NT_011362    5892543   .a..........at...t...g....... 5892571
NT_079596    28061007  .....ga.....t.........cc..... 28060979
NT_079596    16200593  ........t...a..gca.........c. 16200565
NC_000023    124146693 ..t...acc..t................. 124146665
NC_000023    49894588      ...a...gc...............  49894611
NC_000023    27817095  .........t.t........a..tgt... 27817067
NC_000008    135776657 .t.........t....g.......gt... 135776685
NC_000008    136775092  ..........g..t...gga........ 136775119
NC_000007    128641697 .....ga.....t.........cc..... 128641669
NC_000007    93728607  ...........tc........a..      93728630
NC_000007    116769283 ........t...a..gca.........c. 116769255
NC_000020    35696451  .a..........at...t...g....... 35696479
AC_000155    113529970 ..t...acc..t................. 113529942
AC_000155    47366721      ...a...gc...............  47366744
AC_000155    25556966  .........t.t........a..tgt... 25556938
AC_000140    131092354 .t.........t....g.......gt... 131092382
AC_000140    132090003  ..........g..t...gga........ 132090030
AC_000139    123002888 .....ga.....t.........cc..... 123002860
AC_000139    88336132  ...........tc........a..      88336155
AC_000139    111135174 ........t...a..gca.........c. 111135146
AC_000152    32430857  .a..........at...t...g....... 32430885
AC_000066    124531279 ..t...acc..t................. 124531251
AC_000066    53963688      ...a...gc...............  53963711
AC_000066    31945577  .........t.t........a..tgt... 31945549
AC_000051    131949398 .t.........t....g.......gt... 131949426
AC_000051    132947096  ..........g..t...gga........ 132947123
AC_000068    128025439 .....ga.....t.........cc..... 128025411
AC_000068    93057780  ...........tc........a..      93057803
AC_000068    116165025 ........t...a..gca.........c. 116164997
AC_000050    123438194 .....ga.....t.........cc..... 123438166
AC_000050    88426876  ...........tc........a..      88426899
AC_000050    111577768 ........t...a..gca.........c. 111577740
AC_000063    32404055  .a..........at...t...g....... 32404083
GL583030     9527890    ......a.t..a.............    9527914
CM000499     24556134   ......a.t..a.............    24556158
CM000499     43468816  .t........at..ta.t........... 43468788
DS990665     11311835   ......a.t..a.............    11311811
CH003504     25839643   ......a.t..a.............    25839667
CH003504     46754782  .t........at..ta.t........... 46754754
CH003456     24616843   ......a.t..a.............    24616867
CH003456     41702111  .t........at..ta.t........... 41702083
NW_001839149 11311633   ......a.t..a.............    11311609
NW_924062    24415227   ......a.t..a.............    24415251
NW_925173    9822009   ...t.......t...........t.     9821985
NT_008413    24598116   ......a.t..a.............    24598140
NT_033899    3346182   ...t.......t...........t.     3346158
NW_001838553 1861763       ....c....t.........t..... 1861739
NC_000009    24608116   ......a.t..a.............    24608140
NC_000009    73646550  .t........at..ta.t........... 73646522
NC_000011    99783766  ...t.......t...........t.     99783742
AC_000141    24556588   ......a.t..a.............    24556612
AC_000141    43469450  .t........at..ta.t........... 43469422
AC_000133    215331481     ....c....t.........t..... 215331505
AC_000133    70455220   .........ca..t...a...g...... 70455193
AC_000133    48138426  .a...a...t.tc..........t..... 48138398
AC_000133    110921693 ...t..at....a............ga.. 110921665
AC_000133    188307199 ..t.t...c...a.g.........g.... 188307227
AC_000052    24530708   ......a.t..a.............    24530732
AC_000052    44218862  .t........at..ta.t........... 44218834
AC_000054    96953109  ...t.......t...........t.     96953085
CM000491     70455063   .........ca..t...a...g...... 70455036
CM000491     48138276  .a...a...t.tc..........t..... 48138248
CM000491     110921203 ...t..at....a............ga.. 110921175
CM000491     188306376 ..t.t...c...a.g.........g.... 188306404
GL582981     6294875   ........ta..tc...........t..  6294902
GL583058     8341647    .........ca..t...a...g...... 8341674
GL583154     4468811   ..tt..a.t..a................  4468784
CM000495     80992244  ..tt..a.t..a................  80992271
CM000495     160084878 .c.....ct...ag...a........... 160084906
CM000496     107484443 ........ta..tc...........t..  107484470
DS990656     47638666  ........ta..tc...........t..  47638639
DS990669     11339096   .........ca..t...a...g...... 11339123
DS990686     15074012  ..tt..a.t..a................  15074039
CH003496     65842776   .........ca..t...a...g...... 65842803
CH003496     113188037 ...t..at....a............ga.. 113188009
CH003496     192727552 ..t.t...c...a.g.........g.... 192727580
CH003500     85755231  ..tt..a.t..a................  85755258
CH003500     59557205       ......g..........g.c.... 59557228
CH003500     170879574 .c.....ct...ag...a........... 170879602
CH003501     110426577 ........ta..tc...........t..  110426550
CH003448     71520656   .........ca..t...a...g...... 71520629
CH003448     49246033  .a...a...t.tc..........t..... 49246005
CH003448     112054934 ...t..at....a............ga.. 112054906
CH003448     190363738 ..t.t...c...a.g.........g.... 190363766
CH003452     81187881  ..tt..a.t..a................  81187908
CH003452     162342228 .c.....ct...ag...a........... 162342256
CH003453     106803082 ........ta..tc...........t..  106803109
NW_001838990 47638213  ........ta..tc...........t..  47638186
NW_001838579 11339502   .........ca..t...a...g...... 11339529
NW_001838951 15073824  ..tt..a.t..a................  15073851
NW_923184    42733720  ........ta..tc...........t..  42733747
NW_921351    46493924   .........ca..t...a...g...... 46493897
NW_921351    24166862  .a...a...t.tc..........t..... 24166834
NW_922729    15082017  ..tt..a.t..a................  15082044
NT_025741    14087981  ........ta..tc...........t..  14088008
NT_006713    36384252  ..tt..a.t..a................  36384279
NT_032977    42315776   .........ca..t...a...g...... 42315749
NT_032977    19992055  .a...a...t.tc..........t..... 19992027
NT_032977    83033759  ...t..at....a............ga.. 83033731
NC_000001    72343858   .........ca..t...a...g...... 72343831
NC_000001    50020137  .a...a...t.tc..........t..... 50020109
NC_000001    113061841 ...t..at....a............ga.. 113061813
NC_000001    217632238 ..t.t...c...a.g.........g.... 217632266
NC_000006    109918524 ........ta..tc...........t..  109918551
NC_000005    85789893  ..tt..a.t..a................  85789920
NC_000005    164985188 .c.....ct...ag...a........... 164985216
AC_000138    107484685 ........ta..tc...........t..  107484712
AC_000137    80991933  ..tt..a.t..a................  80991960
AC_000137    160084625 .c.....ct...ag...a........... 160084653
AC_000049    110665116 ........ta..tc...........t..  110665143
AC_000048    81682173  ..tt..a.t..a................  81682200
AC_000048    161023182 .c.....ct...ag...a........... 161023210
AC_000044    70633066   .........ca..t...a...g...... 70633039
AC_000044    48306004  .a...a...t.tc..........t..... 48305976
AC_000044    111292369 ...t..at....a............ga.. 111292341
AC_000044    190856084 ..t.t...c...a.g.........g.... 190856112
CM000492     194498187   ....ga...gc...............  194498212
GL583033     6913269     ....ga...gc...............  6913244
CM000511     33294759    ............g......g.cc...  33294784
DS990660     28054560    ....ga...gc...............  28054585
CH003497     207598960   ....ga...gc...............  207598935
CH003516     34110813    ............g......g.cc...  34110838
BA000005     33338084    ............g......g.cc...  33338109
CH003449     193708843   ....ga...gc...............  193708868
CH003468     32533385    ............g......g.cc...  32533410
NW_927384    32513035    ............g......g.cc...  32513060
NW_001838863 28054159    ....ga...gc...............  28054184
NW_921618    7316165     ....ga...gc...............  7316190
NT_005403    52858937    ....ga...gc...............  52858962
NT_011515    4909179     ............g......g.cc...  4909204
NC_000021    47914738    ............g......g.cc...  47914763
NC_000002    202649519   ....ga...gc...............  202649544
AC_000153    33294693    ............g......g.cc...  33294718
AC_000134    194497853   ....ga...gc...............  194497878
AC_000064    33027912    ............g......g.cc...  33027937
AC_000045    196401635   ....ga...gc...............  196401660
GL583076     1387334   ...........aa....r.....       1387356
GL583087     3914105   ...........tc........a..      3914128
DS990707     5116515   ...........tc........a..      5116492
CH003470     51163126      ...a...gc...............  51163149
CH003470     28645326  .........t.t........a..tgt... 28645298
NW_927704    528513        ...a...gc...............  528536
NW_001839064 5116578   ...........tc........a..      5116555
NW_923574    16965913  ...........tc........a..      16965936
NT_079595    18958992  ...........tc........a..      18959015
CM000494     35640512  .....g..c.ag...g...........g. 35640540
CM000494     181267261 ...c.....tga..........c.a.... 181267233
GL582980     38361542  .c.....ct...ag...a........... 38361570
GL582987     26198515  .a..........tt..cc........g.. 26198487
GL582988     23546193  .........t.t........a..tgt... 23546165
GL582991     9894433   ..t.t..t.t.a...........t..... 9894405
GL583005     7397548   ...t..at....a............ga.. 7397576
GL583014     10411618  ........t...a..gca.........c. 10411590
GL583017     14094198  ...c.....tga..........c.a.... 14094170
GL583025     2595102   .t........at..ta.t........... 2595074
GL583053     6411995   ..t.t...c...a.g.........g.... 6412023
GL583092     5723521   .........ag.ct...t.....t..... 5723549
GL583103     4444974   .....g..c.ag...g...........g. 4445002
GL583235     2155272   .a...a...t.tc..........t..... 2155300
GL583243     1190726   .a...a.t...g....a.........a.. 1190754
CM000508     1099822   .a...a.t...g....a.........a.. 1099794
CM000508     67821965  .a..........tt..cc........g.. 67821937
DS990657     45748590  ...c.....tga..........c.a.... 45748562
DS990662     25748717  ..t.t..t.t.a...........t..... 25748689
DS990673     19347896  .........t.t........a..tgt... 19347868
DS990693     10377708  .c.....ct...ag...a........... 10377680
DS990695     18905508  .a..........tt..cc........g.. 18905480
DS990702     2640875   .t........at..ta.t........... 2640847
DS990706     5621313   ..t.t...c...a.g.........g.... 5621285
DS990716     4171068   ...t..at....a............ga.. 4171040
DS990724     1088182   .a...a.t...g....a.........a.. 1088154
DS990751     814211    .a...a...t.tc..........t..... 814239
DS990758     4474886   .....g..c.ag...g...........g. 4474914
DS486024     2262328   .........ag.ct...t.....t..... 2262300
DS486024     25748695  ..t.t..t.t.a...........t..... 25748667
CH003499     37390926  .....g..c.ag...g...........g. 37390954
CH003499     47388494  .........ta.c....c.a....c.... 47388466
CH003508     15918601  .....a.a...tt...g.........g.. 15918629
CH003509     2144990   .........ag.ct...t.....t..... 2144962
CH003513     2978954   .a...a.t...g....a.........a.. 2978926
CH003513     73745828  .a..........tt..cc........g.. 73745800
CH003451     35949088  .....g..c.ag...g...........g. 35949116
CH003451     182356906 ...c.....tga..........c.a.... 182356878
CH003460     14509399  .....a.a...tt...g.........g.. 14509427
CH003461     2263775   .........ag.ct...t.....t..... 2263747
CH003465     1008078   .a...a.t...g....a.........a.. 1008050
CH003465     66782328  .a..........tt..cc........g.. 66782300
NT_086357    958763    ........t...a..gca.........c. 958735
NW_926794    11021844  ..t.t...c...a.g.........g.... 11021872
NW_926940    1014343   .a...a.t...g....a.........a.. 1014315
NW_927700    26343859  .........t.t........a..tgt... 26343831
NW_927129    5988392   .a..........tt..cc........g.. 5988364
NW_001838881 4760225   ..t.t..t.t.a...........t..... 4760197
NW_001838921 45748141  ...c.....tga..........c.a.... 45748113
NW_001842360 19347927  .........t.t........a..tgt... 19347899
NW_001838954 10377700  .c.....ct...ag...a........... 10377672
NW_001838469 18905673  .a..........tt..cc........g.. 18905645
NW_001839221 2640987   .t........at..ta.t........... 2640959
NW_001838537 5621485   ..t.t...c...a.g.........g.... 5621457
NW_001838594 4170999   ...t..at....a............ga.. 4170971
NW_001838461 1088198   .a...a.t...g....a.........a.. 1088170
NW_001838578 814212    .a...a...t.tc..........t..... 814240
NW_922217    65097587  ...c.....tga..........c.a.... 65097559
NW_922784    38651198  .c.....ct...ag...a........... 38651226
NW_925539    2261353   .........ag.ct...t.....t..... 2261325
NW_922073    26880105  .....g..c.ag...g...........g. 26880133
NW_924484    2598898   .t........at..ta.t........... 2598870
NW_922462    4010580   ...t..at....a............ga.. 4010552
NT_167197    25698857  .........t.t........a..tgt... 25698829
NT_008470    2811082   .t........at..ta.t........... 2811054
NT_023133    9796461   .c.....ct...ag...a........... 9796489
NT_016297    3473158   .....g..c.ag...g...........g. 3473186
NT_016354    110059169 ...c.....tga..........c.a.... 110059141
NT_167186    11150017  ..t.t...c...a.g.........g.... 11150045
NT_025028    18880837  .a..........tt..cc........g.. 18880809
NT_010859    1129728   .a...a.t...g....a.........a.. 1129700
NW_001838110 2262328   .........ag.ct...t.....t..... 2262300
NW_001838901 4474764   .....g..c.ag...g...........g. 4474792
NC_000004    36313796  .....g..c.ag...g...........g. 36313824
NC_000004    185511448 ...c.....tga..........c.a.... 185511420
NC_000018    1139728   .a...a.t...g....a.........a.. 1139700
NC_000018    71089973  .a..........tt..cc........g.. 71089945
AC_000136    35640098  .....g..c.ag...g...........g. 35640126
AC_000136    181265902 ...c.....tga..........c.a.... 181265874
AC_000150    1099838   .a...a.t...g....a.........a.. 1099810
AC_000150    67822324  .a..........tt..cc........g.. 67822296
AC_000146    2573504   .........ag.ct...t.....t..... 2573476
AC_000047    36753363  .....g..c.ag...g...........g. 36753391
AC_000047    182840108 ...c.....tga..........c.a.... 182840080
AC_000061    1014343   .a...a.t...g....a.........a.. 1014315
AC_000061    67954834  .a..........tt..cc........g.. 67954806
AC_000057    2319231   .........ag.ct...t.....t..... 2319203
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 60,347,311
Number of extensions: 319
Number of successful extensions: 319
Number of sequences better than 1000.0: 218
Number of HSP's gapped: 319
Number of HSP's successfully gapped: 319
Length of query: 29
Length of database: 31,910,071,267
Length adjustment: 23
Effective length of query: 6
Effective length of database: 31,910,036,882
Effective search space: 191460221292
Effective search space used: 191460221292
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)