BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1776
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583092.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000504.1| Homo sapiens chromosome 14, whole genome sho... 28 618
gb|DS990662.1| Homo sapiens SCAF_1112675837338 genomic scaf... 28 618
gb|DS486024.1| Homo sapiens SCAF_1103279188393 genomic scaf... 28 618
gb|CH003509.1| Homo sapiens chromosome 14, whole genome sho... 28 618
gb|CH003461.1| Homo sapiens chromosome 14, whole genome sho... 28 618
emb|AL954800.2| Human chromosome 14 complete sequence 28 618
ref|NW_925539.1| Homo sapiens chromosome 14 genomic contig,... 28 618
ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig... 28 618
ref|NW_001838110.1| Homo sapiens chromosome 14 genomic cont... 28 618
ref|NC_000014.8| Homo sapiens chromosome 14, GRCh37.p2 prim... 28 618
ref|AC_000146.1| Homo sapiens chromosome 14, alternate asse... 28 618
ref|AC_000057.1| Homo sapiens chromosome 14, alternate asse... 28 618
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 749
gb|GL583009.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 28 749
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 749
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 749
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 28 749
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 749
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 749
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 749
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 749
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 749
1_0 1 gcgcaattaactattggcaactcca 25
GL583092 2899848 ..........a.....a...g... 2899871
CM000504 5436606 ..........a.....a...g... 5436583
DS990662 5125414 ..........a.....a...g... 5125391
DS486024 5125632 ..........a.....a...g... 5125609
CH003509 4961953 ..........a.....a...g... 4961930
CH003461 5127914 ..........a.....a...g... 5127891
AL954800 5242824 ..........a.....a...g... 5242801
NW_925539 5129245 ..........a.....a...g... 5129222
NT_026437 6322696 ..........a.....a...g... 6322673
NW_001838110 5125632 ..........a.....a...g... 5125609
NC_000014 25322696 ..........a.....a...g... 25322673
AC_000146 5436808 ..........a.....a...g... 5436785
AC_000057 5187123 ..........a.....a...g... 5187100
CM000493 175032497 ..t..........c........ 175032476
GL583009 19256081 ..t..........c........ 19256060
DS990653 16395962 ..t..........c........ 16395983
CH003498 185075814 ..t..........c........ 185075835
CH003450 175680660 ..t..........c........ 175680639
NW_001838884 16396249 ..t..........c........ 16396270
NW_921807 84240351 ..t..........c........ 84240330
NT_005612 84146126 ..t..........c........ 84146105
NC_000003 177650980 ..t..........c........ 177650959
AC_000135 175032782 ..t..........c........ 175032761
AC_000046 176054681 ..t..........c........ 176054660
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 24,995,804
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 1000.0: 24
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 24
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)