BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1776
         (25 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583092.1|  Homo sapiens unplaced genomic scaffold scaff...    28     618
gb|CM000504.1|  Homo sapiens chromosome 14, whole genome sho...    28     618
gb|DS990662.1|  Homo sapiens SCAF_1112675837338 genomic scaf...    28     618
gb|DS486024.1|  Homo sapiens SCAF_1103279188393 genomic scaf...    28     618
gb|CH003509.1|  Homo sapiens chromosome 14, whole genome sho...    28     618
gb|CH003461.1|  Homo sapiens chromosome 14, whole genome sho...    28     618
emb|AL954800.2|  Human chromosome 14 complete sequence             28     618
ref|NW_925539.1|  Homo sapiens chromosome 14 genomic contig,...    28     618
ref|NT_026437.12|  Homo sapiens chromosome 14 genomic contig...    28     618
ref|NW_001838110.1|  Homo sapiens chromosome 14 genomic cont...    28     618
ref|NC_000014.8|  Homo sapiens chromosome 14, GRCh37.p2 prim...    28     618
ref|AC_000146.1|  Homo sapiens chromosome 14, alternate asse...    28     618
ref|AC_000057.1|  Homo sapiens chromosome 14, alternate asse...    28     618
gb|CM000493.1|  Homo sapiens chromosome 3, whole genome shot...    28     749
gb|GL583009.1|  Homo sapiens unplaced genomic scaffold scaff...    28     749
gb|DS990653.1|  Homo sapiens SCAF_1112675837330 genomic scaf...    28     749
gb|CH003498.1|  Homo sapiens chromosome 3, whole genome shot...    28     749
gb|CH003450.1|  Homo sapiens chromosome 3, whole genome shot...    28     749
ref|NW_001838884.2|  Homo sapiens chromosome 3 genomic conti...    28     749
ref|NW_921807.1|  Homo sapiens chromosome 3 genomic contig, ...    28     749
ref|NT_005612.16|  Homo sapiens chromosome 3 genomic contig,...    28     749
ref|NC_000003.11|  Homo sapiens chromosome 3, GRCh37.p2 prim...    28     749
ref|AC_000135.1|  Homo sapiens chromosome 3, alternate assem...    28     749
ref|AC_000046.1|  Homo sapiens chromosome 3, alternate assem...    28     749
1_0          1         gcgcaattaactattggcaactcca 25
GL583092     2899848   ..........a.....a...g...  2899871
CM000504     5436606   ..........a.....a...g...  5436583
DS990662     5125414   ..........a.....a...g...  5125391
DS486024     5125632   ..........a.....a...g...  5125609
CH003509     4961953   ..........a.....a...g...  4961930
CH003461     5127914   ..........a.....a...g...  5127891
AL954800     5242824   ..........a.....a...g...  5242801
NW_925539    5129245   ..........a.....a...g...  5129222
NT_026437    6322696   ..........a.....a...g...  6322673
NW_001838110 5125632   ..........a.....a...g...  5125609
NC_000014    25322696  ..........a.....a...g...  25322673
AC_000146    5436808   ..........a.....a...g...  5436785
AC_000057    5187123   ..........a.....a...g...  5187100
CM000493     175032497    ..t..........c........ 175032476
GL583009     19256081     ..t..........c........ 19256060
DS990653     16395962     ..t..........c........ 16395983
CH003498     185075814    ..t..........c........ 185075835
CH003450     175680660    ..t..........c........ 175680639
NW_001838884 16396249     ..t..........c........ 16396270
NW_921807    84240351     ..t..........c........ 84240330
NT_005612    84146126     ..t..........c........ 84146105
NC_000003    177650980    ..t..........c........ 177650959
AC_000135    175032782    ..t..........c........ 175032761
AC_000046    176054681    ..t..........c........ 176054660
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 24,995,804
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 1000.0: 24
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 24
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)