BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1777
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 29 287
gb|DS990654.1| Homo sapiens SCAF_1112675837378 genomic scaf... 29 287
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 29 287
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 29 287
ref|NW_927719.1| Homo sapiens chromosome 2 genomic contig, ... 29 287
ref|NW_001838769.1| Homo sapiens chromosome 2 genomic conti... 29 287
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 29 287
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 29 287
ref|NT_022171.15| Homo sapiens chromosome 2 genomic contig,... 29 422
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 29 422
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 618
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 618
gb|GL582985.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583007.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583081.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583174.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583198.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583298.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 618
gb|CM000499.1| Homo sapiens chromosome 9, whole genome shot... 28 618
gb|CM000508.1| Homo sapiens chromosome 18, whole genome sho... 28 618
gb|CM000509.1| Homo sapiens chromosome 19, whole genome sho... 28 618
gb|DS990659.1| Homo sapiens SCAF_1112675837198 genomic scaf... 28 618
gb|DS990691.1| Homo sapiens SCAF_1112675837255 genomic scaf... 28 618
gb|DS990724.1| Homo sapiens SCAF_1112675837289 genomic scaf... 28 618
gb|DS990737.1| Homo sapiens SCAF_1112675835949 genomic scaf... 28 618
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 618
gb|DS990780.1| Homo sapiens SCAF_1112675837354 genomic scaf... 28 618
gb|DS990895.1| Homo sapiens SCAF_1112675837073 genomic scaf... 28 618
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 618
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 618
gb|CH003504.1| Homo sapiens chromosome 9, whole genome shot... 28 618
gb|CH003513.1| Homo sapiens chromosome 18, whole genome sho... 28 618
gb|CH003514.1| Homo sapiens chromosome 19, whole genome sho... 28 618
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 618
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 618
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 618
gb|CH003456.1| Homo sapiens chromosome 9, whole genome shot... 28 618
gb|CH003465.1| Homo sapiens chromosome 18, whole genome sho... 28 618
gb|CH003466.1| Homo sapiens chromosome 19, whole genome sho... 28 618
ref|NW_926940.1| Homo sapiens chromosome 18 genomic contig,... 28 618
ref|NW_927284.1| Homo sapiens chromosome 19 genomic contig,... 28 618
ref|NW_001839136.1| Homo sapiens chromosome 8 genomic conti... 28 618
ref|NW_001838589.2| Homo sapiens chromosome 1 genomic conti... 28 618
ref|NW_001838461.1| Homo sapiens chromosome 18 genomic cont... 28 618
ref|NW_001838903.1| Homo sapiens chromosome 4 genomic conti... 28 618
ref|NW_001838498.2| Homo sapiens chromosome 19 genomic cont... 28 618
ref|NW_001839245.1| Homo sapiens chromosome 9 genomic conti... 28 618
ref|NW_921795.1| Homo sapiens chromosome 1 genomic contig, ... 28 618
ref|NW_923984.1| Homo sapiens chromosome 8 genomic contig, ... 28 618
ref|NW_922073.1| Homo sapiens chromosome 4 genomic contig, ... 28 618
ref|NW_924573.1| Homo sapiens chromosome 9 genomic contig, ... 28 618
ref|NT_024000.16| Homo sapiens chromosome 9 genomic contig,... 28 618
ref|NT_008046.16| Homo sapiens chromosome 8 genomic contig,... 28 618
ref|NT_006238.11| Homo sapiens chromosome 4 genomic contig,... 28 618
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 28 618
ref|NT_011109.16| Homo sapiens chromosome 19 genomic contig... 28 618
ref|NT_010859.14| Homo sapiens chromosome 18 genomic contig... 28 618
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 618
ref|NC_000009.11| Homo sapiens chromosome 9, GRCh37.p2 prim... 28 618
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 618
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 618
ref|NC_000019.9| Homo sapiens chromosome 19, GRCh37.p2 prim... 28 618
ref|NC_000018.9| Homo sapiens chromosome 18, GRCh37.p2 prim... 28 618
ref|AC_000141.1| Homo sapiens chromosome 9, alternate assem... 28 618
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 618
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 618
ref|AC_000151.1| Homo sapiens chromosome 19, alternate asse... 28 618
ref|AC_000150.1| Homo sapiens chromosome 18, alternate asse... 28 618
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 618
ref|AC_000052.1| Homo sapiens chromosome 9, alternate assem... 28 618
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 618
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 618
ref|AC_000062.1| Homo sapiens chromosome 19, alternate asse... 28 618
ref|AC_000061.1| Homo sapiens chromosome 18, alternate asse... 28 618
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 618
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 749
gb|GL582989.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583003.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583021.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583036.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583128.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583130.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 28 749
gb|CM000504.1| Homo sapiens chromosome 14, whole genome sho... 28 749
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 28 749
gb|DS990655.1| Homo sapiens SCAF_1112675837088 genomic scaf... 28 749
gb|DS990670.1| Homo sapiens SCAF_1112675837213 genomic scaf... 28 749
gb|DS990675.1| Homo sapiens SCAF_1112675837128 genomic scaf... 28 749
gb|DS990687.1| Homo sapiens SCAF_1112675837132 genomic scaf... 28 749
gb|DS990765.1| Homo sapiens SCAF_1112675837209 genomic scaf... 28 749
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 749
gb|CH003506.1| Homo sapiens chromosome 11, whole genome sho... 28 749
gb|CH003509.1| Homo sapiens chromosome 14, whole genome sho... 28 749
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 749
gb|CH003458.1| Homo sapiens chromosome 11, whole genome sho... 28 749
gb|CH003461.1| Homo sapiens chromosome 14, whole genome sho... 28 749
emb|AL954800.2| Human chromosome 14 complete sequence 28 749
ref|NW_927206.1| Homo sapiens chromosome 19 genomic contig,... 28 749
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 28 749
ref|NW_001838877.2| Homo sapiens chromosome 3 genomic conti... 28 749
ref|NW_001838878.1| Homo sapiens chromosome 3 genomic conti... 28 749
ref|NW_001838491.1| Homo sapiens chromosome 19 genomic cont... 28 749
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 749
ref|NW_921651.1| Homo sapiens chromosome 3 genomic contig, ... 28 749
ref|NW_925561.1| Homo sapiens chromosome 14 genomic contig,... 28 749
ref|NW_925173.1| Homo sapiens chromosome 11 genomic contig,... 28 749
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 749
ref|NT_022459.15| Homo sapiens chromosome 3 genomic contig,... 28 749
ref|NT_022517.18| Homo sapiens chromosome 3 genomic contig,... 28 749
ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig... 28 749
ref|NT_033899.8| Homo sapiens chromosome 11 genomic contig,... 28 749
ref|NW_001838042.2| Homo sapiens chromosome 11 genomic cont... 28 749
ref|NW_001838113.2| Homo sapiens chromosome 14 genomic cont... 28 749
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 749
ref|NC_000014.8| Homo sapiens chromosome 14, GRCh37.p2 prim... 28 749
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 28 749
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 749
ref|AC_000146.1| Homo sapiens chromosome 14, alternate asse... 28 749
ref|AC_000143.1| Homo sapiens chromosome 11, alternate asse... 28 749
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 749
ref|AC_000057.1| Homo sapiens chromosome 14, alternate asse... 28 749
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 28 749
gb|DS990897.1| Homo sapiens SCAF_1112675836440 genomic scaf... 28 907
ref|NW_001838585.1| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_921350.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NT_004350.19| Homo sapiens chromosome 1 genomic contig,... 28 907
1_0 1 tccagcactccaagctgctgaaatt 25
CM000492 85398439 ...........g.....a..... 85398461
CM000492 90012055 ................... 90012037
DS990654 55494795 ...........g.....a..... 55494817
CH003497 88353214 ...........g.....a..... 88353192
CH003497 94658367 ................... 94658385
CH003449 85242213 ...........g.....a..... 85242235
CH003449 89229488 ................... 89229470
NW_927719 85261632 ...........g.....a..... 85261654
NW_001838769 55494339 ...........g.....a..... 55494361
AC_000134 85398095 ...........g.....a..... 85398117
AC_000134 90011685 ................... 90011667
AC_000045 85329697 ...........g.....a..... 85329719
AC_000045 90337628 ................... 90337610
NT_022171 658355 ................... 658337
NC_000002 95984526 ................... 95984508
CM000491 93794243 ............c.ct........ 93794220
CM000491 333995 ...........g........ 333976
CM000494 48327327 ..t.c......c............ 48327350
GL582985 20598262 .........a.....aa....... 20598285
GL583007 11579067 ............c.ct........ 11579044
GL583081 6352439 ..ca............t....... 6352462
GL583174 3930194 ..t.c......c............ 3930217
GL583198 1501106 .....r.....g.....a..... 1501084
GL583298 1101264 ...t......c.........t... 1101241
CM000498 117501003 .........a.....aa....... 117501026
CM000499 109807355 .........g.........g.c.. 109807332
CM000508 8618849 ..ca............t....... 8618872
CM000509 49398554 ...t......c.........t... 49398531
CM000509 26627795 ......cg.............. 26627816
DS990659 35443023 .........a.....aa....... 35443046
DS990691 8435168 ............c.ct........ 8435191
DS990724 8607209 ..ca............t....... 8607232
DS990737 8705425 ..t.c......c............ 8705448
CH003496 95379782 ............c.ct........ 95379759
CH003496 134174 ...........g........ 134155
DS990780 2867804 ...t......c.........t... 2867827
DS990895 1144740 .........g.........g.c.. 1144717
CH003499 51038581 ..t.c......c............ 51038604
CH003503 122874424 .........a.....aa....... 122874447
CH003504 115929618 .........g.........g.c.. 115929595
CH003513 10479462 ..ca............t....... 10479485
CH003514 55606117 ...t......c.........t... 55606140
CH003514 29919098 ......cg.............. 29919119
CH003448 94680368 ............c.ct........ 94680345
CH003448 287505 ...........g........ 287486
CH003451 48633125 ..t.c......c............ 48633148
CH003455 117698114 .........a.....aa....... 117698137
CH003456 108260744 .........g.........g.c.. 108260721
CH003465 8513789 ..ca............t....... 8513812
CH003466 50714562 ...t......c.........t... 50714539
CH003466 27023870 ......cg.............. 27023891
NW_926940 8538608 ..ca............t....... 8538631
NW_927284 2426077 ...t......c.........t... 2426054
NW_001839136 35442566 .........a.....aa....... 35442589
NW_001838589 8435009 ............c.ct........ 8435032
NW_001838461 8606939 ..ca............t....... 8606962
NW_001838903 8705657 ..t.c......c............ 8705680
NW_001838498 2867711 ...t......c.........t... 2867734
NW_001839245 1144713 .........g.........g.c.. 1144690
NW_921795 11734380 ............c.ct........ 11734357
NW_923984 35330324 .........a.....aa....... 35330347
NW_922073 39582562 ..t.c......c............ 39582585
NW_924573 24357999 .........g.........g.c.. 24357976
NT_024000 1126888 .........g.........g.c.. 1126865
NT_008046 35450541 .........a.....aa....... 35450564
NT_006238 8710306 ..t.c......c............ 8710329
NT_032977 65644988 ............c.ct........ 65644965
NT_011109 25336157 ...t......c.........t... 25336134
NT_011109 2383419 ......cg.............. 2383440
NT_010859 8644260 ..ca............t....... 8644283
NC_000001 95673070 ............c.ct........ 95673047
NC_000001 1061575 ...........g........ 1061556
NC_000009 140343885 .........g.........g.c.. 140343862
NC_000008 122176992 .........a.....aa....... 122177015
NC_000004 49007402 ..t.c......c............ 49007425
NC_000019 53067939 ...t......c.........t... 53067916
NC_000019 30115201 ......cg.............. 30115222
NC_000018 8654260 ..ca............t....... 8654283
AC_000141 109807902 .........g.........g.c.. 109807879
AC_000140 117501042 .........a.....aa....... 117501065
AC_000136 48327222 ..t.c......c............ 48327245
AC_000151 49398195 ...t......c.........t... 49398172
AC_000151 26627606 ......cg.............. 26627627
AC_000150 8618579 ..ca............t....... 8618602
AC_000133 93795000 ............c.ct........ 93794977
AC_000133 333996 ...........g........ 333977
AC_000052 110870168 .........g.........g.c.. 110870145
AC_000051 118365006 .........a.....aa....... 118365029
AC_000047 49455820 ..t.c......c............ 49455843
AC_000062 50118793 ...t......c.........t... 50118770
AC_000062 26813360 ......cg.............. 26813381
AC_000061 8538608 ..ca............t....... 8538631
AC_000044 93927486 ............c.ct........ 93927463
AC_000044 1520935 ...........g........ 1520954
CM000493 21659362 ..............a.....g. 21659341
CM000493 72805034 .........t........t... 72805013
CM000493 145564872 .........t..........t. 145564893
GL582989 2675382 .........t........t... 2675403
GL583003 7003248 ..........ac.......... 7003227
GL583021 4879796 .t..............t..... 4879817
GL583036 1520798 .........t..........t. 1520819
GL583128 2175831 ......cg.............. 2175852
GL583130 327697 ..............a.....g. 327676
CM000501 107561093 .t..............t..... 107561072
CM000504 74891822 ..........ac.......... 74891843
DS990653 45863587 .........t..........t. 45863566
DS990655 44608268 ..............a.....g. 44608289
DS990670 9124954 .t..............t..... 9124975
DS990675 1016005 ..........ac.......... 1015984
DS990687 6537305 .........t........t... 6537284
DS990765 2419802 ......cg.............. 2419823
CH003498 26976835 ..............a.....g. 26976814
CH003498 153462138 .........t..........t. 153462159
CH003506 112980331 .t..............t..... 112980310
CH003509 76092909 ..........ac.......... 76092930
CH003450 21641990 ..............a.....g. 21641969
CH003450 72896857 .........t........t... 72896836
CH003450 145961005 .........t..........t. 145961026
CH003458 108290236 .t..............t..... 108290215
CH003461 74490372 ..........ac.......... 74490393
AL954800 74632758 ..........ac.......... 74632779
NW_927206 2384928 ......cg.............. 2384949
NW_001838884 45864438 .........t..........t. 45864417
NW_001838877 44608182 ..............a.....g. 44608203
NW_001838878 6537354 .........t........t... 6537333
NW_001838491 2419739 ......cg.............. 2419760
NW_921807 54787881 .........t..........t. 54787902
NW_921651 21651242 ..............a.....g. 21651221
NW_921651 72735805 .........t........t... 72735784
NW_925561 41521020 ..........ac.......... 41521041
NW_925173 21660137 .t..............t..... 21660116
NT_005612 54683035 .........t..........t. 54683056
NT_022459 6531372 .........t........t... 6531351
NT_022517 21649653 ..............a.....g. 21649632
NT_026437 75712717 ..........ac.......... 75712738
NT_033899 15200469 .t..............t..... 15200448
NW_001838042 9125084 .t..............t..... 9125105
NW_001838113 1015992 ..........ac.......... 1015971
NC_000003 21709653 ..............a.....g. 21709632
NC_000003 72801642 .........t........t... 72801621
NC_000003 148187889 .........t..........t. 148187910
NC_000014 94712717 ..........ac.......... 94712738
NC_000011 111638053 .t..............t..... 111638032
AC_000135 21659480 ..............a.....g. 21659459
AC_000135 72805115 .........t........t... 72805094
AC_000135 145564593 .........t..........t. 145564614
AC_000146 74892550 ..........ac.......... 74892571
AC_000143 107561925 .t..............t..... 107561904
AC_000046 21651242 ..............a.....g. 21651221
AC_000046 72735805 .........t........t... 72735784
AC_000046 146602211 .........t..........t. 146602232
AC_000057 74766490 ..........ac.......... 74766511
AC_000054 108791237 .t..............t..... 108791216
DS990897 314748 ...........g........ 314729
NW_001838585 314749 ...........g........ 314730
NW_921350 1520935 ...........g........ 1520954
NT_004350 540207 ...........g........ 540188
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 43,467,687
Number of extensions: 157
Number of successful extensions: 157
Number of sequences better than 1000.0: 127
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 157
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)