BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1779
(29 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 511
gb|GL583143.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|DS990756.1| Homo sapiens SCAF_1112675830177 genomic scaf... 28 511
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 511
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 511
ref|NW_001838913.1| Homo sapiens chromosome 4 genomic conti... 28 511
ref|NW_922162.1| Homo sapiens chromosome 4 genomic contig, ... 28 511
ref|NT_022853.15| Homo sapiens chromosome 4 genomic contig,... 28 511
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 511
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 511
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 511
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|GL583008.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|DS990655.1| Homo sapiens SCAF_1112675837088 genomic scaf... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
ref|NW_001838877.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_921651.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NT_022517.18| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
1_0 1 gaaccagatcacgaacttggagcagtccg 29
CM000494 51388423 .g.........t......tc...... 51388398
GL583143 2753687 .g.........t......tc...... 2753662
DS990756 2785856 .g.........t......tc...... 2785831
CH003499 53963369 .g.........t......tc...... 53963344
CH003451 51594867 .g.........t......tc...... 51594842
NW_001838913 2785852 .g.........t......tc...... 2785827
NW_922162 2766201 .g.........t......tc...... 2766176
NT_022853 2780342 .g.........t......tc...... 2780317
NC_000004 55440459 .g.........t......tc...... 55440434
AC_000136 51388334 .g.........t......tc...... 51388309
AC_000047 52941227 .g.........t......tc...... 52941202
CM000493 11128485 ..g.......tg..g.c..........t. 11128457
GL583008 7092047 ..g.......tg..g.c..........t. 7092019
DS990655 55139145 ..g.......tg..g.c..........t. 55139173
CH003498 13913882 ..g.......tg..g.c..........t. 13913854
CH003450 11128278 ..g.......tg..g.c..........t. 11128250
NW_001838877 55139005 ..g.......tg..g.c..........t. 55139033
NW_921651 11129188 ..g.......tg..g.c..........t. 11129160
NT_022517 11133750 ..g.......tg..g.c..........t. 11133722
NC_000003 11193750 ..g.......tg..g.c..........t. 11193722
AC_000135 11128657 ..g.......tg..g.c..........t. 11128629
AC_000046 11129188 ..g.......tg..g.c..........t. 11129160
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,983,818
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 1000.0: 23
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 23
Length of query: 29
Length of database: 31,910,071,267
Length adjustment: 23
Effective length of query: 6
Effective length of database: 31,910,036,882
Effective search space: 191460221292
Effective search space used: 191460221292
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)