BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1780
(29 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582994.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 29 422
gb|DS990658.1| Homo sapiens SCAF_1112675837357 genomic scaf... 29 422
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 29 422
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 29 422
ref|NW_001838952.2| Homo sapiens chromosome 5 genomic conti... 29 422
ref|NW_922751.1| Homo sapiens chromosome 5 genomic contig, ... 29 422
ref|NT_034772.6| Homo sapiens chromosome 5 genomic contig, ... 29 422
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 29 422
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 29 422
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 29 422
gb|GL583222.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 618
gb|DS990850.1| Homo sapiens SCAF_1112675837196 genomic scaf... 28 618
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 618
emb|CT009680.1| Human chromosome X complete sequence 28 618
ref|NW_927728.1| Homo sapiens chromosome X genomic contig, ... 28 618
ref|NW_001842414.1| Homo sapiens chromosome X genomic conti... 28 618
ref|NT_167198.1| Homo sapiens chromosome X genomic contig, ... 28 618
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 618
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 618
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 618
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|GL583237.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|DS990688.1| Homo sapiens SCAF_1112675830807 genomic scaf... 28 907
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 28 907
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 28 907
ref|NW_001838860.1| Homo sapiens chromosome 2 genomic conti... 28 907
ref|NW_921585.1| Homo sapiens chromosome 2 genomic contig, ... 28 907
ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig,... 28 907
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 907
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 28 907
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 28 907
1_0 1 agctactttgcgagtatgcaaggtgagat 29
GL582994 25797586 ...a...........g.t.....aa... 25797559
CM000495 95270546 ...a...........g.t.....aa... 95270573
DS990658 38706324 ...a...........g.t.....aa... 38706297
CH003500 100654154 ...a...........g.t.....aa... 100654181
CH003452 95531145 ...a...........g.t.....aa... 95531172
NW_001838952 38706443 ...a...........g.t.....aa... 38706416
NW_922751 656162 ...a...........g.t.....aa... 656189
NT_034772 8401226 ...a...........g.t.....aa... 8401253
NC_000005 100087354 ...a...........g.t.....aa... 100087381
AC_000137 95270265 ...a...........g.t.....aa... 95270292
AC_000048 96034991 ...a...........g.t.....aa... 96035018
GL583222 2164655 ..c..t...g.............. 2164632
CM000513 140141079 ..c..t...g.............. 140141056
DS990850 2195323 ..c..t...g.............. 2195300
CH003518 117103540 ..c..t...g.............. 117103517
CT009680 150171398 ..c..t...g.............. 150171375
NW_927728 2472887 ..c..t...g.............. 2472864
NW_001842414 2195321 ..c..t...g.............. 2195298
NT_167198 2204887 ..c..t...g.............. 2204864
NC_000023 151286949 ..c..t...g.............. 151286926
AC_000155 140140933 ..c..t...g.............. 140140910
AC_000066 151532442 ..c..t...g.............. 151532419
CM000492 160383505 ..gc.a...t.t......g.......... 160383477
GL583237 1769303 ..gc.a...t.t......g.......... 1769331
DS990688 18694005 ..gc.a...t.t......g.......... 18693977
CH003497 170559504 ..gc.a...t.t......g.......... 170559476
CH003449 159504227 ..gc.a...t.t......g.......... 159504199
NW_001838860 18694209 ..gc.a...t.t......g.......... 18694181
NW_921585 36302212 ..gc.a...t.t......g.......... 36302184
NT_005403 18712991 ..gc.a...t.t......g.......... 18712963
NC_000002 168503573 ..gc.a...t.t......g.......... 168503545
AC_000134 160383664 ..gc.a...t.t......g.......... 160383636
AC_000045 162112409 ..gc.a...t.t......g.......... 162112381
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,761,807
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 1000.0: 33
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 33
Length of query: 29
Length of database: 31,910,071,267
Length adjustment: 23
Effective length of query: 6
Effective length of database: 31,910,036,882
Effective search space: 191460221292
Effective search space used: 191460221292
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)