BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1845
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583219.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000505.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|DS990826.1| Homo sapiens SCAF_1112675837274 genomic scaf... 28 907
gb|CH003510.1| Homo sapiens chromosome 15, whole genome sho... 28 907
gb|CH003462.1| Homo sapiens chromosome 15, whole genome sho... 28 907
ref|NW_925783.1| Homo sapiens chromosome 15 genomic contig,... 28 907
ref|NT_026446.14| Homo sapiens chromosome 15 genomic contig... 28 907
ref|NW_001838194.1| Homo sapiens chromosome 15 genomic cont... 28 907
ref|NC_000015.9| Homo sapiens chromosome 15, GRCh37.p2 prim... 28 907
ref|AC_000147.1| Homo sapiens chromosome 15, alternate asse... 28 907
ref|AC_000058.1| Homo sapiens chromosome 15, alternate asse... 28 907
1_0 1 aggcaagctgtccttctttg 20
GL583219 182084 ..........a......... 182103
CM000505 3917770 ..........a......... 3917789
DS990826 2224775 ..........a......... 2224794
CH003510 3543971 ..........a......... 3543952
CH003462 2774698 ..........a......... 2774717
NW_925783 2174841 ..........a......... 2174860
NT_026446 2226727 ..........a......... 2226746
NW_001838194 2224739 ..........a......... 2224758
NC_000015 25791580 ..........a......... 25791599
AC_000147 3917708 ..........a......... 3917727
AC_000058 3953880 ..........a......... 3953899
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 31,917,745
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)