BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1846
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582981.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583251.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CM000510.1| Homo sapiens chromosome 20, whole genome sho... 28 907
gb|DS990656.1| Homo sapiens SCAF_1112675837090 genomic scaf... 28 907
gb|DS990898.1| Homo sapiens SCAF_1112675837275 genomic scaf... 28 907
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003515.1| Homo sapiens chromosome 20, whole genome sho... 28 907
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003467.1| Homo sapiens chromosome 20, whole genome sho... 28 907
ref|NW_927317.1| Homo sapiens chromosome 20 genomic contig,... 28 907
ref|NW_001838990.2| Homo sapiens chromosome 6 genomic conti... 28 907
ref|NW_001838659.2| Homo sapiens chromosome 20 genomic cont... 28 907
ref|NW_923184.1| Homo sapiens chromosome 6 genomic contig, ... 28 907
ref|NT_025741.15| Homo sapiens chromosome 6 genomic contig,... 28 907
ref|NT_011387.8| Homo sapiens chromosome 20 genomic contig,... 28 907
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 28 907
ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 pri... 28 907
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000152.1| Homo sapiens chromosome 20, alternate asse... 28 907
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000063.1| Homo sapiens chromosome 20, alternate asse... 28 907
1_0 1 aagcactttagtgacctggaa 21
GL582981 16686940 .......g............ 16686921
GL583251 1279260 ...............t.... 1279241
CM000496 118029531 .......g............ 118029512
CM000510 25013344 ...............t.... 25013325
DS990656 37093578 .......g............ 37093597
DS990898 703572 ...............t.... 703591
CH003501 122826752 .......g............ 122826733
CH003515 26503208 ...............t.... 26503189
CH003453 117327791 .......g............ 117327772
CH003467 24983714 ...............t.... 24983695
NW_927317 24987182 ...............t.... 24987163
NW_001838990 37093351 .......g............ 37093370
NW_001838659 703490 ...............t.... 703509
NW_923184 53259676 .......g............ 53259657
NT_025741 24616208 .......g............ 24616189
NT_011387 24996196 ...............t.... 24996177
NC_000006 120446751 .......g............ 120446732
NC_000020 25056196 ...............t.... 25056177
AC_000138 118029547 .......g............ 118029528
AC_000152 25013476 ...............t.... 25013457
AC_000049 121191072 .......g............ 121191053
AC_000063 25130006 ...............t.... 25129987
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 27,494,531
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 1000.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)