BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1850
(19 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583038.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 29 422
gb|CH003506.1| Homo sapiens chromosome 11, whole genome sho... 29 422
gb|CH003458.1| Homo sapiens chromosome 11, whole genome sho... 29 422
ref|NW_925173.1| Homo sapiens chromosome 11 genomic contig,... 29 422
ref|NT_033899.8| Homo sapiens chromosome 11 genomic contig,... 29 422
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 29 422
ref|AC_000143.1| Homo sapiens chromosome 11, alternate asse... 29 422
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 29 422
1_0 1 agagaccttctctgtccac 19
GL583038 10362810 ................... 10362792
CM000501 128282602 ................... 128282584
CH003506 137519675 ................... 137519657
CH003458 129246889 ................... 129246871
NW_925173 42368268 ................... 42368250
NT_033899 35890421 ................... 35890403
NC_000011 132328005 ................... 132327987
AC_000143 128283810 ................... 128283792
AC_000054 129499368 ................... 129499350
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 27,565,908
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 1000.0: 9
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 9
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)