BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1863
         (27 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000491.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
gb|GL583016.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|DS990669.1|  Homo sapiens SCAF_1112675837377 genomic scaf...    28     907
gb|CH003496.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
gb|CH003448.1|  Homo sapiens chromosome 1, whole genome shot...    28     907
ref|NW_001838579.2|  Homo sapiens chromosome 1 genomic conti...    28     907
ref|NW_921351.1|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NT_032977.9|  Homo sapiens chromosome 1 genomic contig, ...    28     907
ref|NC_000001.10|  Homo sapiens chromosome 1, GRCh37.p2 prim...    28     907
ref|AC_000133.1|  Homo sapiens chromosome 1, alternate assem...    28     907
ref|AC_000044.1|  Homo sapiens chromosome 1, alternate assem...    28     907

1_0          2        tgataaccatggacgaggac 21
CM000491     64821899 .............g...... 64821880
GL583016     14394433 .............g...... 14394414
DS990669     16972260 .............g...... 16972279
CH003496     71486029 .............g...... 71486048
CH003448     65907602 .............g...... 65907583
NW_001838579 16972744 .............g...... 16972763
NW_921351    40864326 .............g...... 40864307
NT_032977    36685029 .............g...... 36685010
NC_000001    66713111 .............g...... 66713092
AC_000133    64821978 .............g...... 64821959
AC_000044    65003468 .............g...... 65003449

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 15,282,432
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 1000.0: 12
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 12
Length of query: 27
Length of database: 31,910,071,267
Length adjustment: 21
Effective length of query: 6
Effective length of database: 31,910,039,872
Effective search space: 191460239232
Effective search space used: 191460239232
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)