BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1865
(26 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 30 237
gb|GL583064.1| Homo sapiens unplaced genomic scaffold scaff... 30 237
gb|DS990660.1| Homo sapiens SCAF_1112675837341 genomic scaf... 30 237
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 30 237
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 30 237
ref|NW_001838863.1| Homo sapiens chromosome 2 genomic conti... 30 237
ref|NW_921618.1| Homo sapiens chromosome 2 genomic contig, ... 30 237
ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig,... 30 237
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 30 237
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 30 237
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 30 237
gb|DS990919.1| Homo sapiens SCAF_1112675837318 genomic scaf... 29 422
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 29 422
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 29 422
emb|CT009680.1| Human chromosome X complete sequence 29 422
ref|NW_927700.1| Homo sapiens chromosome X genomic contig, ... 29 422
ref|NW_001841157.1| Homo sapiens unplaced genomic contig, a... 29 422
ref|NC_000024.9| Homo sapiens chromosome Y, GRCh37.p2 prima... 29 422
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 29 422
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 29 422
gb|GL583019.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|CM000503.1| Homo sapiens chromosome 13, whole genome sho... 28 618
gb|DS990727.1| Homo sapiens SCAF_1112675837066 genomic scaf... 28 618
gb|CH003508.1| Homo sapiens chromosome 13, whole genome sho... 28 618
gb|CH003460.1| Homo sapiens chromosome 13, whole genome sho... 28 618
ref|NW_925506.1| Homo sapiens chromosome 13 genomic contig,... 28 618
ref|NT_024524.14| Homo sapiens chromosome 13 genomic contig... 28 618
ref|NW_001838082.1| Homo sapiens chromosome 13 genomic cont... 28 618
ref|NC_000013.10| Homo sapiens chromosome 13, GRCh37.p2 pri... 28 618
ref|AC_000145.1| Homo sapiens chromosome 13, alternate asse... 28 618
ref|AC_000056.1| Homo sapiens chromosome 13, alternate asse... 28 618
gb|CM000506.1| Homo sapiens chromosome 16, whole genome sho... 28 749
gb|DS990934.1| Homo sapiens SCAF_1112675837047 genomic scaf... 28 749
gb|CH003511.1| Homo sapiens chromosome 16, whole genome sho... 28 749
gb|CH003463.1| Homo sapiens chromosome 16, whole genome sho... 28 749
ref|NW_926018.1| Homo sapiens chromosome 16 genomic contig,... 28 749
ref|NW_001838342.1| Homo sapiens chromosome 16 genomic cont... 28 749
ref|NT_010393.16| Homo sapiens chromosome 16 genomic contig... 28 749
ref|NC_000016.9| Homo sapiens chromosome 16, GRCh37.p2 prim... 28 749
ref|AC_000148.1| Homo sapiens chromosome 16, alternate asse... 28 749
ref|AC_000059.1| Homo sapiens chromosome 16, alternate asse... 28 749
1_0 1 aagacatagagatggtgtccggagac 26
CM000492 205565328 ...........t.......t.c... 205565352
GL583064 4012518 ...........t.......t.c... 4012542
DS990660 39121701 ...........t.......t.c... 39121725
CH003497 218627709 ...........t.......t.c... 218627733
CH003449 204768734 ...........t.......t.c... 204768758
NW_001838863 39121301 ...........t.......t.c... 39121325
NW_921618 18394174 ...........t.......t.c... 18394198
NT_005403 63924993 ...........t.......t.c... 63925017
NC_000002 213715575 ...........t.......t.c... 213715599
AC_000134 205564995 ...........t.......t.c... 205565019
AC_000045 207479644 ...........t.......t.c... 207479668
DS990919 145124 ................... 145142
CH003518 125699128 ................... 125699146
CH003470 1838155 ................... 1838137
CT009680 1663033 ................... 1663015
NW_927700 593728 ................... 593710
NW_001841157 145146 ................... 145164
NC_000024 1872633 ................... 1872615
NC_000023 1922633 ................... 1922615
AC_000066 6195446 ................... 6195428
GL583019 7140259 r........t.........t..g.. 7140235
CM000503 58833141 ........t.........t..g.. 58833164
DS990727 2751535 ........t.........t..g.. 2751558
CH003508 62552148 ........t.........t..g.. 62552171
CH003460 58780767 ........t.........t..g.. 58780790
NW_925506 13723802 ........t.........t..g.. 13723825
NT_024524 59116393 ........t.........t..g.. 59116416
NW_001838082 2751437 ........t.........t..g.. 2751460
NC_000013 78136393 ........t.........t..g.. 78136416
AC_000145 58834236 ........t.........t..g.. 58834259
AC_000056 59034510 ........t.........t..g.. 59034533
CM000506 9403833 .c.........a.......... 9403854
DS990934 795028 .c.........a.......... 795049
CH003511 6800577 .c.........a.......... 6800598
CH003463 9395274 .c.........a.......... 9395295
NW_926018 9365635 .c.........a.......... 9365656
NW_001838342 795038 .c.........a.......... 795059
NT_010393 9422927 .c.........a.......... 9422948
NC_000016 9482927 .c.........a.......... 9482948
AC_000148 9403763 .c.........a.......... 9403784
AC_000059 9649985 .c.........a.......... 9650006
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,180,020
Number of extensions: 41
Number of successful extensions: 41
Number of sequences better than 1000.0: 41
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 41
Length of query: 26
Length of database: 31,910,071,267
Length adjustment: 20
Effective length of query: 6
Effective length of database: 31,910,041,367
Effective search space: 191460248202
Effective search space used: 191460248202
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)