BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1868
(27 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583025.1| Homo sapiens unplaced genomic scaffold scaff... 30 196
gb|CM000499.1| Homo sapiens chromosome 9, whole genome shot... 30 196
gb|DS990702.1| Homo sapiens SCAF_1112675837172 genomic scaf... 30 196
gb|CH003504.1| Homo sapiens chromosome 9, whole genome shot... 30 196
gb|CH003456.1| Homo sapiens chromosome 9, whole genome shot... 30 196
ref|NW_001839221.1| Homo sapiens chromosome 9 genomic conti... 30 196
ref|NW_924484.1| Homo sapiens chromosome 9 genomic contig, ... 30 196
ref|NT_008470.19| Homo sapiens chromosome 9 genomic contig,... 30 196
ref|NC_000009.11| Homo sapiens chromosome 9, GRCh37.p2 prim... 30 196
ref|AC_000141.1| Homo sapiens chromosome 9, alternate assem... 30 196
ref|AC_000052.1| Homo sapiens chromosome 9, alternate assem... 30 196
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 29 287
gb|GL583042.1| Homo sapiens unplaced genomic scaffold scaff... 29 287
gb|GL583179.1| Homo sapiens unplaced genomic scaffold scaff... 29 287
gb|CM000507.1| Homo sapiens chromosome 17, whole genome sho... 29 287
gb|DS990654.1| Homo sapiens SCAF_1112675837378 genomic scaf... 29 287
gb|DS990712.1| Homo sapiens SCAF_1112675837225 genomic scaf... 29 287
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 29 287
gb|CH003512.1| Homo sapiens chromosome 17, whole genome sho... 29 287
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 29 287
gb|CH003464.1| Homo sapiens chromosome 17, whole genome sho... 29 287
ref|NW_927719.1| Homo sapiens chromosome 2 genomic contig, ... 29 287
ref|NW_926894.1| Homo sapiens chromosome 17 genomic contig,... 29 287
ref|NW_001838769.1| Homo sapiens chromosome 2 genomic conti... 29 287
ref|NW_001838448.1| Homo sapiens chromosome 17 genomic cont... 29 287
ref|NT_022184.15| Homo sapiens chromosome 2 genomic contig,... 29 287
ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig... 29 287
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 29 287
ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 pri... 29 287
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 29 287
ref|AC_000149.1| Homo sapiens chromosome 17, alternate asse... 29 287
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 29 287
ref|AC_000060.1| Homo sapiens chromosome 17, alternate asse... 29 287
gb|GL582981.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 29 348
gb|DS990656.1| Homo sapiens SCAF_1112675837090 genomic scaf... 29 348
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 29 348
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 29 348
ref|NW_001838990.2| Homo sapiens chromosome 6 genomic conti... 29 348
ref|NW_923184.1| Homo sapiens chromosome 6 genomic contig, ... 29 348
ref|NT_025741.15| Homo sapiens chromosome 6 genomic contig,... 29 348
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 29 348
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 29 348
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 29 348
gb|GL582982.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|DS990916.1| Homo sapiens SCAF_1112675834709 genomic scaf... 28 749
ref|NW_001839240.1| Homo sapiens chromosome 9 genomic conti... 28 749
ref|NW_924573.1| Homo sapiens chromosome 9 genomic contig, ... 28 749
ref|NT_035014.4| Homo sapiens chromosome 9 genomic contig, ... 28 749
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|GL583125.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|DS990781.1| Homo sapiens SCAF_1112675837185 genomic scaf... 28 907
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 907
ref|NW_001838523.1| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_923572.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NT_021937.19| Homo sapiens chromosome 1 genomic contig,... 28 907
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 907
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 907
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 907
1_0 1 ctgcaaagggacccacggtggaacagg 27
GL583025 14487832 ..........c....gca......... 14487858
CM000499 55561399 ..........c....gca......... 55561425
CM000499 103764877 .............t.c...... 103764856
DS990702 14733458 ..........c....gca......... 14733484
CH003504 59614942 ..........c....gca......... 59614968
CH003504 109747866 .............t.c...... 109747845
CH003456 53767609 ..........c....gca......... 53767635
CH003456 102202317 .............t.c...... 102202296
NW_001839221 14733580 ..........c....gca......... 14733606
NW_924484 14687114 ..........c....gca......... 14687140
NT_008470 14901647 ..........c....gca......... 14901673
NC_000009 85737115 ..........c....gca......... 85737141
NC_000009 134272827 .............t.c...... 134272806
AC_000141 55562043 ..........c....gca......... 55562069
AC_000141 103765437 .............t.c...... 103765416
AC_000052 56307078 ..........c....gca......... 56307104
AC_000052 104813004 .............t.c...... 104812983
CM000492 66296323 .............g...a..... 66296345
GL583042 3641048 .....g....t............ 3641026
GL583179 2118698 .............g...a..... 2118676
CM000507 44707081 .....g....t............ 44707059
DS990654 36392679 .............g...a..... 36392701
DS990712 4574753 .....g....t............ 4574731
CH003497 68756267 .............g...a..... 68756289
CH003512 48366443 .....g....t............ 48366421
CH003449 66300065 .............g...a..... 66300087
CH003464 48501780 .....g....t............ 48501758
NW_927719 66341796 .............g...a..... 66341818
NW_926894 3729732 .....g....t............ 3729710
NW_001838769 36392708 .............g...a..... 36392730
NW_001838448 4574731 .....g....t............ 4574709
NT_022184 45383328 .............g...a..... 45383350
NT_010783 14611668 .....g....t............ 14611646
NC_000002 66561441 .............g...a..... 66561463
NC_000017 49337516 .....g....t............ 49337494
AC_000134 66296464 .............g...a..... 66296486
AC_000149 44706751 .....g....t............ 44706729
AC_000045 66409861 .............g...a..... 66409883
AC_000060 45798710 .....g....t............ 45798688
GL582981 3454193 ....c................ 3454173
CM000496 104624957 ....c................ 104624937
DS990656 50498152 ....c................ 50498172
CH003501 113285371 ....c................ 113285391
CH003453 103943895 ....c................ 103943875
NW_001838990 50497694 ....c................ 50497714
NW_923184 39867757 ....c................ 39867737
NT_025741 11348037 ....c................ 11348017
NC_000006 107178580 ....c................ 107178560
AC_000138 104625204 ....c................ 104625184
AC_000049 107799153 ....c................ 107799133
GL582982 33122659 .............t.c...... 33122638
DS990916 1058104 .............t.c...... 1058083
NW_001839240 1058140 .............t.c...... 1058119
NW_924573 18300835 .............t.c...... 18300814
NT_035014 1049767 .............t.c...... 1049746
CM000491 6361315 ..................g. 6361296
GL583125 4395876 ..................g. 4395857
CH003496 4240765 ..................g. 4240746
DS990781 1350871 ..................g. 1350852
CH003448 6560054 ..................g. 6560035
NW_001838523 1350916 ..................g. 1350897
NW_923572 3898561 ..................g. 3898542
NT_021937 3218582 ..................g. 3218563
NC_000001 7213850 ..................g. 7213831
AC_000133 6361416 ..................g. 6361397
AC_000044 6329235 ..................g. 6329216
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 26,254,216
Number of extensions: 66
Number of successful extensions: 66
Number of sequences better than 1000.0: 60
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 66
Length of query: 27
Length of database: 31,910,071,267
Length adjustment: 21
Effective length of query: 6
Effective length of database: 31,910,039,872
Effective search space: 191460239232
Effective search space used: 191460239232
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)