BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1869
         (25 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583027.1|  Homo sapiens unplaced genomic scaffold scaff...    28     618
gb|CM000497.1|  Homo sapiens chromosome 7, whole genome shot...    28     618
gb|DS990666.1|  Homo sapiens SCAF_1112675837326 genomic scaf...    28     618
gb|CH003502.1|  Homo sapiens chromosome 7, whole genome shot...    28     618
gb|DS486028.1|  Homo sapiens SCAF_1103279188381 genomic scaf...    28     618
gb|CH003454.1|  Homo sapiens chromosome 7, whole genome shot...    28     618
tpg|BL000002.1|  TPA: Homo sapiens chromosome 7                    28     618
ref|NW_001839071.2|  Homo sapiens chromosome 7 genomic conti...    28     618
ref|NW_923640.1|  Homo sapiens chromosome 7 genomic contig, ...    28     618
ref|NT_007933.15|  Homo sapiens chromosome 7 genomic contig,...    28     618
ref|NT_079596.2|  Homo sapiens chromosome 7 genomic contig, ...    28     618
ref|NC_000007.13|  Homo sapiens chromosome 7, GRCh37.p2 prim...    28     618
ref|AC_000139.1|  Homo sapiens chromosome 7, alternate assem...    28     618
ref|AC_000068.1|  Homo sapiens chromosome 7, alternate assem...    28     618
ref|AC_000050.1|  Homo sapiens chromosome 7, alternate assem...    28     618
1_0          1         ccgggagcgatagagcagggcccc 24
GL583027     1096289   ..t......c.g............ 1096312
CM000497     123774235 ..t......c.g............ 123774258
DS990666     1880602   ..t......c.g............ 1880579
CH003502     117618442 ..t......c.g............ 117618465
DS486028     1880670   ..t......c.g............ 1880647
CH003454     124681442 ..t......c.g............ 124681465
BL000002     128893378 ..t......c.g............ 128893401
NW_001839071 1880670   ..t......c.g............ 1880647
NW_923640    26967055  ..t......c.g............ 26967078
NT_007933    67445402  ..t......c.g............ 67445425
NT_079596    28832403  ..t......c.g............ 28832426
NC_000007    129412559 ..t......c.g............ 129412582
AC_000139    123773844 ..t......c.g............ 123773867
AC_000068    128796835 ..t......c.g............ 128796858
AC_000050    124208304 ..t......c.g............ 124208327
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 17,418,812
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 1000.0: 15
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)