BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1870
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583027.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000497.1| Homo sapiens chromosome 7, whole genome shot... 28 618
gb|DS990666.1| Homo sapiens SCAF_1112675837326 genomic scaf... 28 618
gb|CH003502.1| Homo sapiens chromosome 7, whole genome shot... 28 618
gb|DS486028.1| Homo sapiens SCAF_1103279188381 genomic scaf... 28 618
gb|CH003454.1| Homo sapiens chromosome 7, whole genome shot... 28 618
tpg|BL000002.1| TPA: Homo sapiens chromosome 7 28 618
ref|NW_001839071.2| Homo sapiens chromosome 7 genomic conti... 28 618
ref|NW_923640.1| Homo sapiens chromosome 7 genomic contig, ... 28 618
ref|NT_007933.15| Homo sapiens chromosome 7 genomic contig,... 28 618
ref|NT_079596.2| Homo sapiens chromosome 7 genomic contig, ... 28 618
ref|NC_000007.13| Homo sapiens chromosome 7, GRCh37.p2 prim... 28 618
ref|AC_000139.1| Homo sapiens chromosome 7, alternate assem... 28 618
ref|AC_000068.1| Homo sapiens chromosome 7, alternate assem... 28 618
ref|AC_000050.1| Homo sapiens chromosome 7, alternate assem... 28 618
1_0 1 ccgggagcgatagagcagggcccc 24
GL583027 1096289 ..t......c.g............ 1096312
CM000497 123774235 ..t......c.g............ 123774258
DS990666 1880602 ..t......c.g............ 1880579
CH003502 117618442 ..t......c.g............ 117618465
DS486028 1880670 ..t......c.g............ 1880647
CH003454 124681442 ..t......c.g............ 124681465
BL000002 128893378 ..t......c.g............ 128893401
NW_001839071 1880670 ..t......c.g............ 1880647
NW_923640 26967055 ..t......c.g............ 26967078
NT_007933 67445402 ..t......c.g............ 67445425
NT_079596 28832403 ..t......c.g............ 28832426
NC_000007 129412559 ..t......c.g............ 129412582
AC_000139 123773844 ..t......c.g............ 123773867
AC_000068 128796835 ..t......c.g............ 128796858
AC_000050 124208304 ..t......c.g............ 124208327
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 17,418,812
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 1000.0: 15
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)