BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1874
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582984.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000500.1| Homo sapiens chromosome 10, whole genome sho... 28 618
gb|DS990677.1| Homo sapiens SCAF_1112675837177 genomic scaf... 28 618
gb|CH003505.1| Homo sapiens chromosome 10, whole genome sho... 28 618
gb|CH003457.1| Homo sapiens chromosome 10, whole genome sho... 28 618
ref|NW_924584.1| Homo sapiens chromosome 10 genomic contig,... 28 618
ref|NT_008705.16| Homo sapiens chromosome 10 genomic contig... 28 618
ref|NW_001837931.2| Homo sapiens chromosome 10 genomic cont... 28 618
ref|NC_000010.10| Homo sapiens chromosome 10, GRCh37.p2 pri... 28 618
ref|AC_000142.1| Homo sapiens chromosome 10, alternate asse... 28 618
ref|AC_000053.1| Homo sapiens chromosome 10, alternate asse... 28 618
gb|GL582985.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|DS990659.1| Homo sapiens SCAF_1112675837198 genomic scaf... 28 749
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 749
ref|NW_001839136.1| Homo sapiens chromosome 8 genomic conti... 28 749
ref|NW_923984.1| Homo sapiens chromosome 8 genomic contig, ... 28 749
ref|NT_008046.16| Homo sapiens chromosome 8 genomic contig,... 28 749
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 749
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 749
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 749
1_0 2 taagacctccctttacaacctaag 25
GL582984 22685275 .....g..g..c............ 22685252
CM000500 15420035 .....g..g..c............ 15420058
DS990677 15362255 .....g..g..c............ 15362232
CH003505 16016906 .....g..g..c............ 16016929
CH003457 15770562 .....g..g..c............ 15770585
NW_924584 15440659 .....g..g..c............ 15440682
NT_008705 15447133 .....g..g..c............ 15447156
NW_001837931 15361972 .....g..g..c............ 15361949
NC_000010 15507133 .....g..g..c............ 15507156
AC_000142 15420005 .....g..g..c............ 15420028
AC_000053 15440659 .....g..g..c............ 15440682
GL582985 5776366 ..c.........g......... 5776387
CM000498 102622450 ..c.........g......... 102622471
DS990659 20564470 ..c.........g......... 20564491
CH003455 102850848 ..c.........g......... 102850869
NW_001839136 20564099 ..c.........g......... 20564120
NW_923984 20453327 ..c.........g......... 20453348
NT_008046 20574261 ..c.........g......... 20574282
NC_000008 107300712 ..c.........g......... 107300733
AC_000140 102622575 ..c.........g......... 102622596
AC_000051 103488009 ..c.........g......... 103488030
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 29,971,686
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 1000.0: 21
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 21
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)