BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1875
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583095.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 28 618
gb|DS990743.1| Homo sapiens SCAF_1112675837270 genomic scaf... 28 618
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 28 618
gb|CH003505.1| Homo sapiens chromosome 10, whole genome sho... 28 618
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 28 618
ref|NW_001838935.2| Homo sapiens chromosome 5 genomic conti... 28 618
ref|NW_922618.1| Homo sapiens chromosome 5 genomic contig, ... 28 618
ref|NT_006713.15| Homo sapiens chromosome 5 genomic contig,... 28 618
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 28 618
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 28 618
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 28 618
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|GL583070.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583100.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|DS990698.1| Homo sapiens SCAF_1112675837162 genomic scaf... 28 907
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|DS990802.1| Homo sapiens SCAF_1112675835043 genomic scaf... 28 907
gb|DS486060.1| Homo sapiens SCAF_1103279188217 genomic scaf... 28 907
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 907
ref|NW_927128.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NW_001838549.1| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_001839139.2| Homo sapiens chromosome 8 genomic conti... 28 907
ref|NW_923984.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NT_008046.16| Homo sapiens chromosome 8 genomic contig,... 28 907
ref|NT_167186.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 907
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 907
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 907
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 907
1_0 1 ccttgctgttccacaatgtcgtatt 25
GL583095 2293673 ......a..........c.c.... 2293650
CM000495 63559798 ......a..........c.c.... 63559821
DS990743 2240810 ......a..........c.c.... 2240787
CH003500 65882728 ......a..........c.c.... 65882751
CH003505 21490034 ......a..........c.c.... 21490011
CH003452 63549987 ......a..........c.c.... 63550010
NW_001838935 2240953 ......a..........c.c.... 2240930
NW_922618 6024490 ......a..........c.c.... 6024513
NT_006713 17195281 ......a..........c.c.... 17195304
NC_000005 66600922 ......a..........c.c.... 66600945
AC_000137 63559524 ......a..........c.c.... 63559547
AC_000048 63599342 ......a..........c.c.... 63599365
CM000491 207910628 ........g........... 207910609
GL583070 7242690 .........c.......... 7242709
GL583100 4998603 ........g........... 4998622
CM000498 134216602 .........c.......... 134216583
DS990698 6955097 ........g........... 6955078
CH003496 212273404 ........g........... 212273385
DS990802 851402 .........c.......... 851421
DS486060 6955179 ........g........... 6955160
CH003503 139367937 .........c.......... 139367918
CH003448 210267770 ........g........... 210267751
CH003455 134395417 .........c.......... 134395398
NW_927128 13285438 ........g........... 13285419
NW_001838549 6955179 ........g........... 6955160
NW_001839139 851426 .........c.......... 851445
NW_923984 52036561 .........c.......... 52036542
NT_008046 52175346 .........c.......... 52175327
NT_167186 30972793 ........g........... 30972774
NC_000001 237455014 ........g........... 237454995
NC_000008 138901797 .........c.......... 138901778
AC_000140 134216607 .........c.......... 134216588
AC_000133 207911609 ........g........... 207911590
AC_000051 135071243 .........c.......... 135071224
AC_000044 210704268 ........g........... 210704249
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,805,664
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 1000.0: 35
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 35
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)