BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1877
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583040.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583102.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 28 749
gb|DS990699.1| Homo sapiens SCAF_1112675837092 genomic scaf... 28 749
gb|CH003504.1| Homo sapiens chromosome 9, whole genome shot... 28 749
gb|CH003507.1| Homo sapiens chromosome 12, whole genome sho... 28 749
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 28 749
ref|NW_001839149.2| Homo sapiens chromosome 9 genomic conti... 28 749
ref|NW_924062.1| Homo sapiens chromosome 9 genomic contig, ... 28 749
ref|NW_925395.1| Homo sapiens chromosome 12 genomic contig,... 28 749
ref|NT_008413.18| Homo sapiens chromosome 9 genomic contig,... 28 749
ref|NT_029419.12| Homo sapiens chromosome 12 genomic contig... 28 749
ref|NW_001838060.2| Homo sapiens chromosome 12 genomic cont... 28 749
ref|NC_000009.11| Homo sapiens chromosome 9, GRCh37.p2 prim... 28 749
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 28 749
ref|AC_000141.1| Homo sapiens chromosome 9, alternate assem... 28 749
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 28 749
ref|AC_000052.1| Homo sapiens chromosome 9, alternate assem... 28 749
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 28 749
1_0 1 cgattaaggaccttgttatgacaaa 25
GL583040 5460350 .a.........t.......... 5460371
GL583102 1934844 .....t..a............. 1934823
CM000502 65963483 .a.........t.......... 65963462
DS990699 7602913 .a.........t.......... 7602934
CH003504 8786744 .....t..a............. 8786723
CH003507 69263316 .a.........t.......... 69263295
CH003459 66366300 .a.........t.......... 66366279
NW_001839149 27265449 .....t..a............. 27265470
NW_924062 8461301 .....t..a............. 8461280
NW_925395 16200230 .a.........t.......... 16200209
NT_008413 8632404 .....t..a............. 8632383
NT_029419 31055958 .a.........t.......... 31055937
NW_001838060 7602908 .a.........t.......... 7602929
NC_000009 8642404 .....t..a............. 8642383
NC_000012 68912652 .a.........t.......... 68912631
AC_000141 8602772 .....t..a............. 8602751
AC_000144 65963669 .a.........t.......... 65963648
AC_000052 8576782 .....t..a............. 8576761
AC_000055 68576401 .a.........t.......... 68576380
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 27,343,362
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 1000.0: 19
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 19
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)