BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1878
(26 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583040.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|CM000507.1| Homo sapiens chromosome 17, whole genome sho... 28 511
gb|DS990714.1| Homo sapiens SCAF_1112675837113 genomic scaf... 28 511
gb|CH003464.1| Homo sapiens chromosome 17, whole genome sho... 28 511
ref|NW_926918.1| Homo sapiens chromosome 17 genomic contig,... 28 511
ref|NW_001838454.2| Homo sapiens chromosome 17 genomic cont... 28 511
ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig... 28 511
ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 pri... 28 511
ref|AC_000149.1| Homo sapiens chromosome 17, alternate asse... 28 511
ref|AC_000060.1| Homo sapiens chromosome 17, alternate asse... 28 511
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|GL583236.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|DS990712.1| Homo sapiens SCAF_1112675837225 genomic scaf... 28 749
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|DS990884.1| Homo sapiens SCAF_1112675830795 genomic scaf... 28 749
gb|CH003512.1| Homo sapiens chromosome 17, whole genome sho... 28 749
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 749
ref|NW_926894.1| Homo sapiens chromosome 17 genomic contig,... 28 749
ref|NW_001838448.1| Homo sapiens chromosome 17 genomic cont... 28 749
ref|NW_001838564.2| Homo sapiens chromosome 1 genomic conti... 28 749
ref|NW_925794.1| Homo sapiens chromosome 1 genomic contig, ... 28 749
ref|NT_004610.19| Homo sapiens chromosome 1 genomic contig,... 28 749
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 749
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 749
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 749
1_0 1 gcccgctcctacctgcaatatcaagg 26
GL583040 12289805 .........a.a......g....g.. 12289830
CM000507 68877380 .........a.a......g....g.. 68877355
CM000507 44399886 ..........t....t...... 44399865
DS990714 2029809 .........a.a......g....g.. 2029834
CH003464 72951415 .........a.a......g....g.. 72951390
CH003464 48195415 ..........t....t...... 48195394
NW_926918 10552768 .........a.a......g....g.. 10552743
NW_001838454 2029779 .........a.a......g....g.. 2029804
NT_010783 38727502 .........a.a......g....g.. 38727477
NT_010783 14303950 ..........t....t...... 14303929
NC_000017 73453350 .........a.a......g....g.. 73453325
NC_000017 49029798 ..........t....t...... 49029777
AC_000149 68877443 .........a.a......g....g.. 68877418
AC_000149 44399582 ..........t....t...... 44399561
AC_000060 70047367 .........a.a......g....g.. 70047342
AC_000060 45491071 ..........t....t...... 45491050
CM000491 13722785 .t.............t...... 13722764
GL583236 1471067 .t.............t...... 1471046
GL583236 1471848 .t.............t...... 1471827
DS990712 4267558 ..........t....t...... 4267537
CH003496 9821214 .t.............t...... 9821235
DS990884 1651715 .t.............t...... 1651736
CH003512 48058762 ..........t....t...... 48058741
CH003448 13922553 .t.............t...... 13922532
NW_926894 3422093 ..........t....t...... 3422072
NW_001838448 4267562 ..........t....t...... 4267541
NW_001838564 1651654 .t.............t...... 1651675
NW_925794 1511437 .t.............t...... 1511416
NT_004610 1883051 .t.............t...... 1883030
NC_000001 15202963 .t.............t...... 15202942
AC_000133 13722731 .t.............t...... 13722710
AC_000044 13685841 .t.............t...... 13685820
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 23,868,320
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 1000.0: 25
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 32
Length of query: 26
Length of database: 31,910,071,267
Length adjustment: 20
Effective length of query: 6
Effective length of database: 31,910,041,367
Effective search space: 191460248202
Effective search space used: 191460248202
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)