BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1881
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 29 287
gb|GL582996.1| Homo sapiens unplaced genomic scaffold scaff... 29 287
gb|DS990657.1| Homo sapiens SCAF_1112675837360 genomic scaf... 29 287
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 29 287
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 29 287
ref|NW_001838921.1| Homo sapiens chromosome 4 genomic conti... 29 287
ref|NW_922217.1| Homo sapiens chromosome 4 genomic contig, ... 29 287
ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig,... 29 287
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 29 287
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 29 287
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 29 287
gb|GL583036.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 29 422
gb|DS486073.1| Homo sapiens SCAF_1103279188134 genomic scaf... 29 422
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 29 422
ref|NW_001838577.2| Homo sapiens chromosome 1 genomic conti... 29 422
ref|NW_921351.1| Homo sapiens chromosome 1 genomic contig, ... 29 422
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 29 422
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 29 422
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 618
gb|GL582989.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583048.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000510.1| Homo sapiens chromosome 20, whole genome sho... 28 618
gb|DS990655.1| Homo sapiens SCAF_1112675837088 genomic scaf... 28 618
gb|DS990931.1| Homo sapiens SCAF_1112675837063 genomic scaf... 28 618
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 618
gb|CH003515.1| Homo sapiens chromosome 20, whole genome sho... 28 618
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 618
gb|CH003467.1| Homo sapiens chromosome 20, whole genome sho... 28 618
ref|NW_927339.1| Homo sapiens chromosome 20 genomic contig,... 28 618
ref|NW_001838877.2| Homo sapiens chromosome 3 genomic conti... 28 618
ref|NW_001838671.1| Homo sapiens chromosome 20 genomic cont... 28 618
ref|NW_921651.1| Homo sapiens chromosome 3 genomic contig, ... 28 618
ref|NT_022517.18| Homo sapiens chromosome 3 genomic contig,... 28 618
ref|NT_011333.6| Homo sapiens chromosome 20 genomic contig,... 28 618
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 618
ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 pri... 28 618
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 618
ref|AC_000152.1| Homo sapiens chromosome 20, alternate asse... 28 618
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 618
ref|AC_000063.1| Homo sapiens chromosome 20, alternate asse... 28 618
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|GL583114.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|DS990664.1| Homo sapiens SCAF_1112675837102 genomic scaf... 28 907
ref|NW_926128.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NW_001838533.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NT_004487.19| Homo sapiens chromosome 1 genomic contig,... 28 907
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 907
1_0 1 gatggagtagatttgcctccctggt 25
CM000494 141441170 ..a........c........... 141441192
GL582996 600972 ..a........c........... 600994
DS990657 5922499 ..a........c........... 5922521
CH003499 147613281 ..a........c........... 147613303
CH003451 142571874 ..a........c........... 142571896
NW_001838921 5922442 ..a........c........... 5922464
NW_922217 25294233 ..a........c........... 25294255
NT_016354 70257068 ..a........c........... 70257090
NC_000004 145709347 ..a........c........... 145709369
AC_000136 141440203 ..a........c........... 141440225
AC_000047 143036754 ..a........c........... 143036776
GL583036 8448280 ................... 8448298
CH003496 41181027 ................... 41181009
CH003496 160637457 ..........t......... 160637438
DS486073 755066 ................... 755048
CH003448 41687594 ................... 41687612
CH003448 165805173 ..........t......... 165805192
NW_001838577 697370 ................... 697352
NW_921351 16594653 ................... 16594671
AC_000133 40571128 ................... 40571146
AC_000133 164121046 ..........t......... 164121065
AC_000044 40733795 ................... 40733813
AC_000044 165994852 ..........t......... 165994871
CM000493 58247521 .......c...c.........a.. 58247544
GL582989 17235693 .......c...c.........a.. 17235670
GL583048 11324612 .t.....c.............g.. 11324589
CM000510 58514263 .t.....c.............g.. 58514240
DS990655 8020109 .......c...c.........a.. 8020086
DS990931 534707 .t.....c.............g.. 534684
CH003498 75346734 .......c...c.........a.. 75346711
CH003515 41328256 .t.....c.............g.. 41328279
CH003450 58346496 .......c...c.........a.. 58346519
CH003467 58388365 .t.....c.............g.. 58388342
NW_927339 31972802 .t.....c.............g.. 31972779
NW_001838877 8020045 .......c...c.........a.. 8020022
NW_001838671 534724 .t.....c.............g.. 534701
NW_921651 58164772 .......c...c.........a.. 58164795
NT_022517 58090208 .......c...c.........a.. 58090231
NT_011333 528837 .t.....c.............g.. 528814
NC_000003 58150208 .......c...c.........a.. 58150231
NC_000020 61792206 .t.....c.............g.. 61792183
AC_000135 58247617 .......c...c.........a.. 58247640
AC_000152 58514070 .t.....c.............g.. 58514047
AC_000046 58164772 .......c...c.........a.. 58164795
AC_000063 58469693 .t.....c.............g.. 58469670
CM000491 164119848 ..........t......... 164119867
GL583114 2170900 ..........t......... 2170919
DS990664 12984667 ..........t......... 12984648
NW_926128 31249611 ..........t......... 31249630
NW_001838533 12984205 ..........t......... 12984186
NT_004487 44373886 ..........t......... 44373905
NC_000001 192885244 ..........t......... 192885263
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 40,152,161
Number of extensions: 52
Number of successful extensions: 52
Number of sequences better than 1000.0: 48
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 52
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)