BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1882
(25 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 618
gb|GL583038.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583117.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 28 618
gb|DS990711.1| Homo sapiens SCAF_1112675837079 genomic scaf... 28 618
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 618
gb|DS486073.1| Homo sapiens SCAF_1103279188134 genomic scaf... 28 618
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 618
gb|CH003458.1| Homo sapiens chromosome 11, whole genome sho... 28 618
ref|NW_001838577.2| Homo sapiens chromosome 1 genomic conti... 28 618
ref|NW_921351.1| Homo sapiens chromosome 1 genomic contig, ... 28 618
ref|NW_925173.1| Homo sapiens chromosome 11 genomic contig,... 28 618
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 28 618
ref|NT_033899.8| Homo sapiens chromosome 11 genomic contig,... 28 618
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 618
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 28 618
ref|AC_000143.1| Homo sapiens chromosome 11, alternate asse... 28 618
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 618
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 28 618
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 618
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 749
gb|GL583057.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 28 749
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 749
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 749
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 28 749
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 749
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 749
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 749
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 749
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 749
1_0 1 gcagctttgacgatggagtagattt 25
CM000491 34268957 .........g........t...a. 34268934
GL583038 12590075 .....c.........g....t... 12590098
GL583117 5248236 .........g........t...a. 5248213
CM000501 130541010 .....c.........g....t... 130541033
DS990711 7057249 .........g........t...a. 7057272
CH003496 33507512 .........g........t...a. 33507489
DS486073 7057180 .........g........t...a. 7057203
CH003448 35397001 .........g........t...a. 35396978
CH003458 131500498 .....c.........g....t... 131500521
NW_001838577 6999484 .........g........t...a. 6999507
NW_921351 10286339 .........g........t...a. 10286316
NW_925173 44629683 .....c.........g....t... 44629706
NT_032977 6122941 .........g........t...a. 6122918
NT_033899 38151397 .....c.........g....t... 38151420
NC_000001 36151023 .........g........t...a. 36151000
NC_000011 134588981 .....c.........g....t... 134589004
AC_000143 130542203 .....c.........g....t... 130542226
AC_000133 34269014 .........g........t...a. 34268991
AC_000054 131760783 .....c.........g....t... 131760806
AC_000044 34425481 .........g........t...a. 34425458
CM000493 142396711 .....a.....a.......... 142396732
GL583057 1625216 .....a.....a.......... 1625195
DS990653 49031748 .....a.....a.......... 49031727
CH003498 149698905 .....a.....a.......... 149698884
CH003450 142812152 .....a.....a.......... 142812173
NW_001838884 49032618 .....a.....a.......... 49032597
NW_921807 51624376 .....a.....a.......... 51624397
NT_005612 51512010 .....a.....a.......... 51512031
NC_000003 145016864 .....a.....a.......... 145016885
AC_000135 142396413 .....a.....a.......... 142396434
AC_000046 143438706 .....a.....a.......... 143438727
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 23,520,457
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 1000.0: 31
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 31
Length of query: 25
Length of database: 31,910,071,267
Length adjustment: 19
Effective length of query: 6
Effective length of database: 31,910,042,862
Effective search space: 191460257172
Effective search space used: 191460257172
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)