BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1883
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583038.1| Homo sapiens unplaced genomic scaffold scaff... 32 62
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 32 62
gb|CH003506.1| Homo sapiens chromosome 11, whole genome sho... 32 62
gb|CH003458.1| Homo sapiens chromosome 11, whole genome sho... 32 62
ref|NW_925173.1| Homo sapiens chromosome 11 genomic contig,... 32 62
ref|NT_033899.8| Homo sapiens chromosome 11 genomic contig,... 32 62
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 32 62
ref|AC_000143.1| Homo sapiens chromosome 11, alternate asse... 32 62
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 32 62
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|GL583002.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583034.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583053.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583205.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CM000503.1| Homo sapiens chromosome 13, whole genome sho... 28 907
gb|DS990701.1| Homo sapiens SCAF_1112675837295 genomic scaf... 28 907
gb|DS990706.1| Homo sapiens SCAF_1112675837268 genomic scaf... 28 907
gb|DS990725.1| Homo sapiens SCAF_1112675837052 genomic scaf... 28 907
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|DS990784.1| Homo sapiens SCAF_1112675833483 genomic scaf... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003508.1| Homo sapiens chromosome 13, whole genome sho... 28 907
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 28 907
gb|CH003460.1| Homo sapiens chromosome 13, whole genome sho... 28 907
ref|NW_926794.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NW_001838981.2| Homo sapiens chromosome 6 genomic conti... 28 907
ref|NW_001838537.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_001838876.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_921651.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NW_925473.1| Homo sapiens chromosome 13 genomic contig,... 28 907
ref|NW_923073.1| Homo sapiens chromosome 6 genomic contig, ... 28 907
ref|NT_007592.15| Homo sapiens chromosome 6 genomic contig,... 28 907
ref|NT_022517.18| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_167186.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NT_024524.14| Homo sapiens chromosome 13 genomic contig... 28 907
ref|NW_001838072.1| Homo sapiens chromosome 13 genomic cont... 28 907
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 907
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|NC_000013.10| Homo sapiens chromosome 13, GRCh37.p2 pri... 28 907
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000145.1| Homo sapiens chromosome 13, alternate asse... 28 907
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 907
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000056.1| Homo sapiens chromosome 13, alternate asse... 28 907
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 907
1_0 1 aagagaccttctctgtccact 21
GL583038 10362811 ..................... 10362791
CM000501 128282603 ..................... 128282583
CH003506 137519676 ..................... 137519656
CH003458 129246890 ..................... 129246870
NW_925173 42368269 ..................... 42368249
NT_033899 35890422 ..................... 35890402
NC_000011 132328006 ..................... 132327986
AC_000143 128283811 ..................... 128283791
AC_000054 129499369 ..................... 129499349
CM000491 186779184 ................a... 186779165
CM000493 2980843 ..................g. 2980824
GL583002 11459896 ...............a.... 11459877
GL583034 11482993 ...t................ 11483012
GL583053 4888802 ................a... 4888783
GL583205 2381511 ..................g. 2381492
CM000496 45419059 ...t................ 45419040
CM000503 17269953 ...............a.... 17269934
DS990701 11849010 ...t................ 11849029
DS990706 7148505 ................a... 7148524
DS990725 7361558 ..................g. 7361577
CH003496 191206273 ................a... 191206254
DS990784 5038854 ...............a.... 5038835
CH003498 2673642 ..................g. 2673661
CH003498 2888719 ..................g. 2888738
CH003501 47550017 ...t................ 47549998
CH003508 18458539 ...............a.... 18458520
CH003448 188830271 ................a... 188830252
CH003450 2987518 ..................g. 2987499
CH003453 46086587 ...t................ 46086568
CH003460 17053700 ...............a.... 17053681
NW_926794 9494460 ................a... 9494441
NW_001838981 11849109 ...t................ 11849128
NW_001838537 7148620 ................a... 7148639
NW_001838876 7361707 ..................g. 7361726
NW_921651 2985403 ..................g. 2985384
NW_925473 17259260 ...............a.... 17259241
NW_923073 18712645 ...t................ 18712626
NT_007592 45635432 ...t................ 45635413
NT_022517 2986168 ..................g. 2986149
NT_167186 9622710 ................a... 9622691
NT_024524 17437141 ...............a.... 17437122
NW_001838072 5038875 ...............a.... 5038856
NC_000001 216104931 ................a... 216104912
NC_000006 45695432 ...t................ 45695413
NC_000003 3046168 ..................g. 3046149
NC_000013 36457141 ...............a.... 36457122
AC_000138 45418789 ...t................ 45418770
AC_000135 2980727 ..................g. 2980708
AC_000145 17270223 ...............a.... 17270204
AC_000133 186780064 ................a... 186780045
AC_000049 47248324 ...t................ 47248305
AC_000046 2985403 ..................g. 2985384
AC_000056 17524036 ...............a.... 17524017
AC_000044 189328700 ................a... 189328681
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 30,218,375
Number of extensions: 54
Number of successful extensions: 54
Number of sequences better than 1000.0: 53
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 54
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)