BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1918
         (23 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000509.1|  Homo sapiens chromosome 19, whole genome sho...    28     907
gb|DS990765.1|  Homo sapiens SCAF_1112675837209 genomic scaf...    28     907
gb|CH003514.1|  Homo sapiens chromosome 19, whole genome sho...    28     907
gb|CH003466.1|  Homo sapiens chromosome 19, whole genome sho...    28     907
ref|NW_927206.1|  Homo sapiens chromosome 19 genomic contig,...    28     907
ref|NW_001838491.1|  Homo sapiens chromosome 19 genomic cont...    28     907
ref|NT_011109.16|  Homo sapiens chromosome 19 genomic contig...    28     907
ref|NC_000019.9|  Homo sapiens chromosome 19, GRCh37.p2 prim...    28     907
ref|AC_000151.1|  Homo sapiens chromosome 19, alternate asse...    28     907
ref|AC_000062.1|  Homo sapiens chromosome 19, alternate asse...    28     907

1_0          1        gtgtgggttgaggtatgaac 20
CM000509     26782268 ........g........... 26782287
DS990765     2574275  ........g........... 2574294
CH003514     30154191 ........g........... 30154210
CH003466     27179311 ........g........... 27179330
NW_927206    2540672  ........g........... 2540691
NW_001838491 2574726  ........g........... 2574745
NT_011109    2539105  ........g........... 2539124
NC_000019    30270887 ........g........... 30270906
AC_000151    26782593 ........g........... 26782612
AC_000062    26969104 ........g........... 26969123

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 21,829,778
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 1000.0: 10
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 10
Length of query: 23
Length of database: 31,910,071,267
Length adjustment: 17
Effective length of query: 6
Effective length of database: 31,910,045,852
Effective search space: 191460275112
Effective search space used: 191460275112
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)