BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1930
(27 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583086.1| Homo sapiens unplaced genomic scaffold scaff... 31 91
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 31 91
gb|DS990722.1| Homo sapiens SCAF_1112675837087 genomic scaf... 31 91
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 31 91
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 31 91
ref|NW_001838933.1| Homo sapiens chromosome 5 genomic conti... 31 91
ref|NW_922596.1| Homo sapiens chromosome 5 genomic contig, ... 31 91
ref|NT_006576.16| Homo sapiens chromosome 5 genomic contig,... 31 91
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 31 91
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 31 91
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 31 91
gb|GL582980.1| Homo sapiens unplaced genomic scaffold scaff... 30 196
gb|DS990658.1| Homo sapiens SCAF_1112675837357 genomic scaf... 30 196
ref|NW_001838952.2| Homo sapiens chromosome 5 genomic conti... 30 196
ref|NW_922784.1| Homo sapiens chromosome 5 genomic contig, ... 30 196
ref|NT_034772.6| Homo sapiens chromosome 5 genomic contig, ... 30 196
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 30 237
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 30 237
gb|GL583020.1| Homo sapiens unplaced genomic scaffold scaff... 30 237
gb|CM000514.1| Homo sapiens chromosome Y, whole genome shot... 30 237
gb|DS990682.1| Homo sapiens SCAF_1112675837157 genomic scaf... 30 237
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 30 237
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 30 237
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 30 237
ref|NW_001838900.1| Homo sapiens chromosome 4 genomic conti... 30 237
ref|NW_922073.1| Homo sapiens chromosome 4 genomic contig, ... 30 237
ref|NT_006316.16| Homo sapiens chromosome 4 genomic contig,... 30 237
ref|NT_022171.15| Homo sapiens chromosome 2 genomic contig,... 30 237
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 30 237
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 30 237
ref|NC_000021.8| Homo sapiens chromosome 21, GRCh37.p2 prim... 30 237
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 30 237
ref|AC_000156.1| Homo sapiens chromosome Y, alternate assem... 30 237
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 30 237
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 30 237
ref|AC_000052.1| Homo sapiens chromosome 9, alternate assem... 30 237
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 30 237
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 30 237
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 30 237
gb|GL582988.1| Homo sapiens unplaced genomic scaffold scaff... 29 287
gb|GL583142.1| Homo sapiens unplaced genomic scaffold scaff... 29 287
gb|GL583147.1| Homo sapiens unplaced genomic scaffold scaff... 29 287
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 29 287
gb|CM000510.1| Homo sapiens chromosome 20, whole genome sho... 29 287
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 29 287
gb|DS990673.1| Homo sapiens SCAF_1112675837361 genomic scaf... 29 287
gb|DS990683.1| Homo sapiens SCAF_1112675837311 genomic scaf... 29 287
gb|DS990713.1| Homo sapiens SCAF_1112675837199 genomic scaf... 29 287
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 29 287
gb|CH003515.1| Homo sapiens chromosome 20, whole genome sho... 29 287
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 29 287
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 29 287
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 29 287
gb|CH003467.1| Homo sapiens chromosome 20, whole genome sho... 29 287
emb|CT009680.1| Human chromosome X complete sequence 29 287
ref|NW_927317.1| Homo sapiens chromosome 20 genomic contig,... 29 287
ref|NW_927700.1| Homo sapiens chromosome X genomic contig, ... 29 287
ref|NW_001842360.1| Homo sapiens chromosome X genomic conti... 29 287
ref|NW_001838652.1| Homo sapiens chromosome 20 genomic cont... 29 287
ref|NW_001838980.1| Homo sapiens chromosome 6 genomic conti... 29 287
ref|NW_923073.1| Homo sapiens chromosome 6 genomic contig, ... 29 287
ref|NT_167249.1| Homo sapiens chromosome 6 genomic contig, ... 29 287
ref|NT_167248.1| Homo sapiens chromosome 6 genomic contig, ... 29 287
ref|NT_167247.1| Homo sapiens chromosome 6 genomic contig, ... 29 287
ref|NT_167246.1| Homo sapiens chromosome 6 genomic contig, ... 29 287
ref|NT_167245.1| Homo sapiens chromosome 6 genomic contig, ... 29 287
ref|NT_113891.2| Homo sapiens chromosome 6 genomic contig, ... 29 287
ref|NT_167244.1| Homo sapiens chromosome 6 genomic contig, ... 29 287
ref|NT_167197.1| Homo sapiens chromosome X genomic contig, ... 29 287
ref|NT_007592.15| Homo sapiens chromosome 6 genomic contig,... 29 287
ref|NT_011387.8| Homo sapiens chromosome 20 genomic contig,... 29 287
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 29 287
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 29 287
ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 pri... 29 287
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 29 287
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 29 287
ref|AC_000152.1| Homo sapiens chromosome 20, alternate asse... 29 287
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 29 287
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 29 287
ref|AC_000063.1| Homo sapiens chromosome 20, alternate asse... 29 287
gb|GL582990.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|GL583018.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|GL583165.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|CM000505.1| Homo sapiens chromosome 15, whole genome sho... 28 511
gb|DS990671.1| Homo sapiens SCAF_1112675837203 genomic scaf... 28 511
gb|DS990697.1| Homo sapiens SCAF_1112675837305 genomic scaf... 28 511
gb|DS990768.1| Homo sapiens SCAF_1112675837265 genomic scaf... 28 511
gb|CH003510.1| Homo sapiens chromosome 15, whole genome sho... 28 511
gb|CH003462.1| Homo sapiens chromosome 15, whole genome sho... 28 511
ref|NW_927339.1| Homo sapiens chromosome 20 genomic contig,... 28 511
ref|NW_927721.1| Homo sapiens chromosome X genomic contig, ... 28 511
ref|NW_925884.1| Homo sapiens chromosome 15 genomic contig,... 28 511
ref|NW_001838666.1| Homo sapiens chromosome 20 genomic cont... 28 511
ref|NW_001842398.1| Homo sapiens chromosome X genomic conti... 28 511
ref|NT_011786.16| Homo sapiens chromosome X genomic contig,... 28 511
ref|NT_011362.10| Homo sapiens chromosome 20 genomic contig... 28 511
ref|NT_010194.17| Homo sapiens chromosome 15 genomic contig... 28 511
ref|NW_001838218.2| Homo sapiens chromosome 15 genomic cont... 28 511
ref|NC_000015.9| Homo sapiens chromosome 15, GRCh37.p2 prim... 28 511
ref|AC_000147.1| Homo sapiens chromosome 15, alternate asse... 28 511
ref|AC_000058.1| Homo sapiens chromosome 15, alternate asse... 28 511
gb|GL582995.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|GL583061.1| Homo sapiens unplaced genomic scaffold scaff... 28 618
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 28 618
gb|CM000508.1| Homo sapiens chromosome 18, whole genome sho... 28 618
gb|DS990674.1| Homo sapiens SCAF_1112675837072 genomic scaf... 28 618
gb|DS990704.1| Homo sapiens SCAF_1112675836703 genomic scaf... 28 618
gb|CH003506.1| Homo sapiens chromosome 11, whole genome sho... 28 618
gb|CH003513.1| Homo sapiens chromosome 18, whole genome sho... 28 618
gb|CH003458.1| Homo sapiens chromosome 11, whole genome sho... 28 618
gb|CH003465.1| Homo sapiens chromosome 18, whole genome sho... 28 618
ref|NW_927095.1| Homo sapiens chromosome 18 genomic contig,... 28 618
ref|NW_001838467.2| Homo sapiens chromosome 18 genomic cont... 28 618
ref|NW_925106.1| Homo sapiens chromosome 11 genomic contig,... 28 618
ref|NT_010966.14| Homo sapiens chromosome 18 genomic contig... 28 618
ref|NT_167190.1| Homo sapiens chromosome 11 genomic contig,... 28 618
ref|NW_001838028.2| Homo sapiens chromosome 11 genomic cont... 28 618
ref|NC_000018.9| Homo sapiens chromosome 18, GRCh37.p2 prim... 28 618
ref|NC_000011.9| Homo sapiens chromosome 11, GRCh37.p2 prim... 28 618
ref|AC_000150.1| Homo sapiens chromosome 18, alternate asse... 28 618
ref|AC_000143.1| Homo sapiens chromosome 11, alternate asse... 28 618
ref|AC_000061.1| Homo sapiens chromosome 18, alternate asse... 28 618
ref|AC_000054.1| Homo sapiens chromosome 11, alternate asse... 28 618
gb|GL583019.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583026.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583173.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CM000499.1| Homo sapiens chromosome 9, whole genome shot... 28 749
gb|CM000503.1| Homo sapiens chromosome 13, whole genome sho... 28 749
gb|DS990727.1| Homo sapiens SCAF_1112675837066 genomic scaf... 28 749
gb|DS990733.1| Homo sapiens SCAF_1112675837080 genomic scaf... 28 749
gb|DS990901.1| Homo sapiens SCAF_1112675835121 genomic scaf... 28 749
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CH003504.1| Homo sapiens chromosome 9, whole genome shot... 28 749
gb|CH003508.1| Homo sapiens chromosome 13, whole genome sho... 28 749
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CH003456.1| Homo sapiens chromosome 9, whole genome shot... 28 749
gb|CH003460.1| Homo sapiens chromosome 13, whole genome sho... 28 749
ref|NW_001839128.2| Homo sapiens chromosome 8 genomic conti... 28 749
ref|NW_001839228.1| Homo sapiens chromosome 9 genomic conti... 28 749
ref|NW_923907.1| Homo sapiens chromosome 8 genomic contig, ... 28 749
ref|NW_924484.1| Homo sapiens chromosome 9 genomic contig, ... 28 749
ref|NW_925506.1| Homo sapiens chromosome 13 genomic contig,... 28 749
ref|NT_008470.19| Homo sapiens chromosome 9 genomic contig,... 28 749
ref|NT_167187.1| Homo sapiens chromosome 8 genomic contig, ... 28 749
ref|NT_024524.14| Homo sapiens chromosome 13 genomic contig... 28 749
ref|NW_001838082.1| Homo sapiens chromosome 13 genomic cont... 28 749
ref|NC_000009.11| Homo sapiens chromosome 9, GRCh37.p2 prim... 28 749
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 749
ref|NC_000013.10| Homo sapiens chromosome 13, GRCh37.p2 pri... 28 749
ref|AC_000141.1| Homo sapiens chromosome 9, alternate assem... 28 749
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 749
ref|AC_000145.1| Homo sapiens chromosome 13, alternate asse... 28 749
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 749
ref|AC_000056.1| Homo sapiens chromosome 13, alternate asse... 28 749
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|GL582993.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583016.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|DS990669.1| Homo sapiens SCAF_1112675837377 genomic scaf... 28 907
gb|DS990690.1| Homo sapiens SCAF_1112675837071 genomic scaf... 28 907
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 907
ref|NW_001838579.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_001838973.1| Homo sapiens chromosome 6 genomic conti... 28 907
ref|NW_921351.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NW_922984.1| Homo sapiens chromosome 6 genomic contig, ... 28 907
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 907
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 907
1_0 1 aaaccttcttgtaacatcttatatgat 27
GL583086 6659755 ......t..c......g......... 6659730
CM000495 44291496 ......t..c......g......... 44291471
CM000495 127129429 ...a......t...........g.a.. 127129455
DS990722 8634045 ......t..c......g......... 8634020
CH003500 45952509 ......t..c......g......... 45952484
CH003500 138169536 ...a......t...........g.a.. 138169562
CH003452 44054661 ......t..c......g......... 44054636
CH003452 129332117 ...a......t...........g.a.. 129332143
NW_001838933 8633766 ......t..c......g......... 8633741
NW_922596 9940989 ......t..c......g......... 9940964
NT_006576 44328197 ......t..c......g......... 44328172
NC_000005 44338197 ......t..c......g......... 44338172
NC_000005 131936992 ...a......t...........g.a.. 131937018
AC_000137 44291155 ......t..c......g......... 44291130
AC_000137 127129253 ...a......t...........g.a.. 127129279
AC_000048 44230475 ......t..c......g......... 44230450
AC_000048 128067107 ...a......t...........g.a.. 128067133
GL582980 5793883 ...a......t...........g.a.. 5793909
DS990658 6847441 ...a......t...........g.a.. 6847415
NW_001838952 6847455 ...a......t...........g.a.. 6847429
NW_922784 5695123 ...a......t...........g.a.. 5695149
NT_034772 40250864 ...a......t...........g.a.. 40250890
CM000492 89606379 .a....a......t........... 89606355
CM000494 28210952 ..........t....g......c.. 28210976
GL583020 2936000 ..........t....g......c.. 2935976
CM000514 7671421 .a....a......t........... 7671445
DS990682 19490023 ..........t....g......c.. 19490047
CH003497 93918310 .a....a......t........... 93918286
CH003449 88816607 .a....a......t........... 88816583
CH003451 28539058 ..........t....g......c.. 28539082
NW_001838900 19489998 ..........t....g......c.. 19490022
NW_922073 19450113 ..........t....g......c.. 19450137
NT_006316 20054492 ..........t....g......c.. 20054516
NT_022171 250872 .a....a......t........... 250848
NC_000001 143255512 .a....a......t........... 143255488
NC_000001 55558790 .....a.............. 55558771
NC_000004 28872695 ..........t....g......c.. 28872719
NC_000021 9723852 .a....a......t........... 9723876
NC_000002 95577043 .a....a......t........... 95577019
AC_000156 7672176 .a....a......t........... 7672200
AC_000136 28210665 ..........t....g......c.. 28210689
AC_000134 89606034 .a....a......t........... 89606010
AC_000052 41232163 .a....a......t........... 41232187
AC_000052 63322965 .......t...........a.. 63322944
AC_000047 29323371 ..........t....g......c.. 29323395
AC_000045 89927557 .a....a......t........... 89927533
AC_000055 51721508 .a....a......t........... 51721484
GL582988 9860667 .....c..........g...... 9860645
GL583142 985607 .......g.........t..... 985585
GL583147 2363277 .......t.........t..... 2363255
CM000496 29297507 .......t.........t..... 29297529
CM000496 11766723 ............c....... 11766704
CM000510 9062062 .......g.........t..... 9062084
CM000510 40315678 ...t............a....a.a.. 40315703
CM000513 11685780 .....c..........g...... 11685758
CM000513 118993360 .....c.........t....t.t... 118993385
DS990673 5476746 .....c..........g...... 5476724
DS990683 9062062 .......g.........t..... 9062084
DS990713 2569361 .......t.........t..... 2569383
CH003501 34479377 .......t.........t..... 34479355
CH003501 12493040 ............c....... 12493021
CH003515 9678601 .......g.........t..... 9678623
CH003515 44370576 ...t............a....a.a.. 44370601
CH003518 124727752 .....c..........g...... 124727774
CH003518 98403470 .....c.........t....t.t... 98403495
CH003470 14682439 .....c..........g...... 14682417
CH003470 124669009 .....c.........t....t.t... 124669034
CH003453 29344405 .......t.........t..... 29344427
CH003453 11713256 ............c....... 11713237
CH003467 9039264 .......g.........t..... 9039286
CH003467 40216769 ...t............a....a.a.. 40216794
CT009680 13484086 .....c..........g...... 13484064
CT009680 128629160 .....c.........t....t.t... 128629185
NW_927317 9037659 .......g.........t..... 9037681
NW_927700 12443186 .....c..........g...... 12443164
NW_001842360 5476785 .....c..........g...... 5476763
NW_001838652 9062201 .......g.........t..... 9062223
NW_001838980 2569492 .......t.........t..... 2569514
NW_923073 2560390 .......t.........t..... 2560412
NT_167249 830551 .......t.........t..... 830573
NT_167248 793304 .......t.........t..... 793326
NT_167247 793204 .......t.........t..... 793226
NT_167246 792988 .......t.........t..... 793010
NT_167245 793349 .......t.........t..... 793371
NT_113891 1008806 .......t.........t..... 1008828
NT_167244 793498 .......t.........t..... 793520
NT_167197 11810751 .....c..........g...... 11810729
NT_007592 29430014 .......t.........t..... 29430036
NT_007592 11774670 ............c....... 11774651
NT_011387 9050386 .......g.........t..... 9050408
NC_000023 13928989 .....c..........g...... 13928967
NC_000023 129597886 .....c.........t....t.t... 129597911
NC_000006 29490014 .......t.........t..... 29490036
NC_000006 11834670 ............c....... 11834651
NC_000020 9110386 .......g.........t..... 9110408
NC_000020 43573927 ...t............a....a.a.. 43573952
AC_000155 11685824 .....c..........g...... 11685802
AC_000155 118993280 .....c.........t....t.t... 118993305
AC_000138 29297183 .......t.........t..... 29297205
AC_000138 11766451 ............c....... 11766432
AC_000152 9062201 .......g.........t..... 9062223
AC_000152 40315606 ...t............a....a.a.. 40315631
AC_000066 18044904 .....c..........g...... 18044882
AC_000066 129984352 .....c.........t....t.t... 129984377
AC_000049 31096069 .......t.........t..... 31096091
AC_000049 13062762 ............c....... 13062743
AC_000063 9180483 .......g.........t..... 9180505
AC_000063 40282559 ...t............a....a.a.. 40282584
GL582990 24139222 ..c...g..g..............a. 24139247
GL583018 3178938 ...t............a....a.a.. 3178963
GL583165 3664092 .....c.........t....t.t... 3664117
CM000505 46304692 ..c...g..g..............a. 46304717
DS990671 4886334 ..c...g..g..............a. 4886309
DS990697 6636618 ...t............a....a.a.. 6636643
DS990768 5204367 .....c.........t....t.t... 5204392
CH003510 49646873 ..c...g..g..............a. 49646898
CH003462 45787116 ..c...g..g..............a. 45787141
NW_927339 13785668 ...t............a....a.a.. 13785693
NW_927721 10189927 .....c.........t....t.t... 10189952
NW_925884 25458841 ..c...g..g..............a. 25458866
NW_001838666 6636455 ...t............a....a.a.. 6636480
NW_001842398 5204356 .....c.........t....t.t... 5204381
NT_011786 13865596 .....c.........t....t.t... 13865621
NT_011362 13770019 ...t............a....a.a.. 13770044
NT_010194 40262265 ..c...g..g..............a. 40262290
NW_001838218 4886326 ..c...g..g..............a. 4886301
NC_000015 69471708 ..c...g..g..............a. 69471733
AC_000147 46304684 ..c...g..g..............a. 46304709
AC_000058 46361024 ..c...g..g..............a. 46361049
GL582995 10205100 ...........g.......c.g.. 10205077
GL582995 20759725 ..g.a............t...... 20759748
GL583061 6319061 .a.g......t............. 6319038
CM000501 80362478 .a.g......t............. 80362455
CM000508 25621967 ...........g.......c.g.. 25621944
CM000508 36235571 ..g.a............t...... 36235594
DS990674 5165124 ..g.a............t...... 5165101
DS990674 15778728 ...........g.......c.g.. 15778751
DS990704 3612419 .a.g......t............. 3612442
CH003506 83735119 .a.g......t............. 83735096
CH003513 29146427 ...........g.......c.g.. 29146404
CH003513 40600876 ..g.a............t...... 40600899
CH003458 82559329 .a.g......t............. 82559306
CH003465 24479341 ...........g.......c.g.. 24479318
CH003465 35088719 ..g.a............t...... 35088742
NW_927095 10242496 ...........g.......c.g.. 10242473
NW_927095 20853515 ..g.a............t...... 20853538
NW_001838467 5165273 ..g.a............t...... 5165250
NW_001838467 15778963 ...........g.......c.g.. 15778986
NW_925106 29723607 .a.g......t............. 29723584
NT_010966 10255317 ...........g.......c.g.. 10255294
NT_010966 20865627 ..g.a............t...... 20865650
NT_167190 29371961 .a.g......t............. 29371938
NW_001838028 3612340 .a.g......t............. 3612363
NC_000018 28766215 ...........g.......c.g.. 28766192
NC_000018 39376525 ..g.a............t...... 39376548
NC_000011 84066166 .a.g......t............. 84066143
AC_000150 25621839 ...........g.......c.g.. 25621816
AC_000150 36235529 ..g.a............t...... 36235552
AC_000143 80363297 .a.g......t............. 80363274
AC_000061 25574091 ...........g.......c.g.. 25574068
AC_000061 36185110 ..g.a............t...... 36185133
AC_000054 81375531 .a.g......t............. 81375508
GL583019 1412605 ..t.a................. 1412584
GL583026 3472471 .t...............g.... 3472450
GL583173 2006416 .......t...........a.. 2006395
CM000498 30535964 .t...............g.... 30535943
CM000499 62568229 .......t...........a.. 62568208
CM000503 64576841 ..t.a................. 64576862
DS990727 8495235 ..t.a................. 8495256
DS990733 6774821 .t...............g.... 6774842
DS990901 242563 .......t...........a.. 242542
CH003503 40523504 .t...............g.... 40523483
CH003504 67212031 .......t...........a.. 67212010
CH003508 68679940 ..t.a................. 68679961
CH003455 30660766 .t...............g.... 30660745
CH003456 60763050 .......t...........a.. 60763029
CH003460 64539453 ..t.a................. 64539474
NW_001839128 6774929 .t...............g.... 6774950
NW_001839228 242557 .......t...........a.. 242536
NW_923907 19517239 .t...............g.... 19517218
NW_924484 21703001 .......t...........a.. 21702980
NW_925506 19465057 ..t.a................. 19465078
NT_008470 22052838 .......t...........a.. 22052817
NT_167187 19849097 .t...............g.... 19849076
NT_024524 64858186 ..t.a................. 64858207
NW_001838082 8495430 ..t.a................. 8495451
NC_000009 92888306 .......t...........a.. 92888285
NC_000008 31990951 .t...............g.... 31990930
NC_000013 83878186 ..t.a................. 83878207
AC_000141 62568825 .......t...........a.. 62568804
AC_000140 30536077 .t...............g.... 30536056
AC_000145 64578229 ..t.a................. 64578250
AC_000051 30949401 .t...............g.... 30949380
AC_000056 64775765 ..t.a................. 64775786
CM000491 53671631 .....a.............. 53671612
GL582993 11373273 ............c....... 11373254
GL583016 3341487 .....a.............. 3341468
DS990669 28122528 .....a.............. 28122547
DS990690 8111533 ............c....... 8111514
CH003496 53346479 .....a.............. 53346460
CH003448 54779017 .....a.............. 54778998
NW_001838579 28122913 .....a.............. 28122932
NW_001838973 8111488 ............c....... 8111469
NW_921351 29707240 .....a.............. 29707221
NW_922984 11458018 ............c....... 11457999
NT_032977 25530708 .....a.............. 25530689
AC_000133 53671809 .....a.............. 53671790
AC_000044 53846382 .....a.............. 53846363
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 39,331,640
Number of extensions: 208
Number of successful extensions: 208
Number of sequences better than 1000.0: 169
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 208
Length of query: 27
Length of database: 31,910,071,267
Length adjustment: 21
Effective length of query: 6
Effective length of database: 31,910,039,872
Effective search space: 191460239232
Effective search space used: 191460239232
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)