BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1931
(27 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583003.1| Homo sapiens unplaced genomic scaffold scaff... 32 35
gb|CM000504.1| Homo sapiens chromosome 14, whole genome sho... 32 35
gb|DS990735.1| Homo sapiens SCAF_1112675837272 genomic scaf... 32 35
gb|CH003509.1| Homo sapiens chromosome 14, whole genome sho... 32 35
gb|CH003461.1| Homo sapiens chromosome 14, whole genome sho... 32 35
emb|AL954800.2| Human chromosome 14 complete sequence 32 35
ref|NW_925561.1| Homo sapiens chromosome 14 genomic contig,... 32 35
ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig... 32 35
ref|NW_001838115.2| Homo sapiens chromosome 14 genomic cont... 32 35
ref|NC_000014.8| Homo sapiens chromosome 14, GRCh37.p2 prim... 32 35
ref|AC_000146.1| Homo sapiens chromosome 14, alternate asse... 32 35
ref|AC_000057.1| Homo sapiens chromosome 14, alternate asse... 32 35
gb|GL583074.1| Homo sapiens unplaced genomic scaffold scaff... 29 287
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 29 287
gb|DS990686.1| Homo sapiens SCAF_1112675837340 genomic scaf... 29 287
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 29 287
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 29 287
ref|NW_001838951.1| Homo sapiens chromosome 5 genomic conti... 29 287
ref|NW_922729.1| Homo sapiens chromosome 5 genomic contig, ... 29 287
ref|NT_006713.15| Homo sapiens chromosome 5 genomic contig,... 29 287
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 29 287
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 29 287
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 29 287
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 28 511
gb|GL582994.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|GL583079.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|GL583237.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 511
gb|DS990658.1| Homo sapiens SCAF_1112675837357 genomic scaf... 28 511
gb|DS990688.1| Homo sapiens SCAF_1112675830807 genomic scaf... 28 511
gb|DS990739.1| Homo sapiens SCAF_1112675837352 genomic scaf... 28 511
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 28 511
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 511
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 511
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 28 511
emb|CT009680.1| Human chromosome X complete sequence 28 511
ref|NW_927711.1| Homo sapiens chromosome X genomic contig, ... 28 511
ref|NW_001838952.2| Homo sapiens chromosome 5 genomic conti... 28 511
ref|NW_001838860.1| Homo sapiens chromosome 2 genomic conti... 28 511
ref|NW_001842373.1| Homo sapiens chromosome X genomic conti... 28 511
ref|NW_921585.1| Homo sapiens chromosome 2 genomic contig, ... 28 511
ref|NW_922751.1| Homo sapiens chromosome 5 genomic contig, ... 28 511
ref|NT_011669.17| Homo sapiens chromosome X genomic contig,... 28 511
ref|NT_034772.6| Homo sapiens chromosome 5 genomic contig, ... 28 511
ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig,... 28 511
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 511
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 511
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 511
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 28 511
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 511
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 28 511
gb|CM000500.1| Homo sapiens chromosome 10, whole genome sho... 28 618
gb|DS990776.1| Homo sapiens SCAF_1112675837182 genomic scaf... 28 618
gb|CH003457.1| Homo sapiens chromosome 10, whole genome sho... 28 618
ref|NW_924584.1| Homo sapiens chromosome 10 genomic contig,... 28 618
ref|NT_008705.16| Homo sapiens chromosome 10 genomic contig... 28 618
ref|NW_001837930.2| Homo sapiens chromosome 10 genomic cont... 28 618
ref|NC_000010.10| Homo sapiens chromosome 10, GRCh37.p2 pri... 28 618
ref|AC_000142.1| Homo sapiens chromosome 10, alternate asse... 28 618
ref|AC_000053.1| Homo sapiens chromosome 10, alternate asse... 28 618
gb|CM000494.1| Homo sapiens chromosome 4, whole genome shot... 28 749
gb|GL582996.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|DS990657.1| Homo sapiens SCAF_1112675837360 genomic scaf... 28 749
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 749
gb|CH003451.1| Homo sapiens chromosome 4, whole genome shot... 28 749
ref|NW_001838921.1| Homo sapiens chromosome 4 genomic conti... 28 749
ref|NW_922217.1| Homo sapiens chromosome 4 genomic contig, ... 28 749
ref|NT_016354.19| Homo sapiens chromosome 4 genomic contig,... 28 749
ref|NC_000004.11| Homo sapiens chromosome 4, GRCh37.p2 prim... 28 749
ref|AC_000136.1| Homo sapiens chromosome 4, alternate assem... 28 749
ref|AC_000047.1| Homo sapiens chromosome 4, alternate assem... 28 749
gb|GL583092.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|DS990662.1| Homo sapiens SCAF_1112675837338 genomic scaf... 28 907
gb|DS486024.1| Homo sapiens SCAF_1103279188393 genomic scaf... 28 907
ref|NW_925539.1| Homo sapiens chromosome 14 genomic contig,... 28 907
ref|NW_001838110.1| Homo sapiens chromosome 14 genomic cont... 28 907
1_0 1 aaagaagtactatcagattgaccaacc 27
GL583003 1485740 ........ga............a.... 1485766
CM000504 80418415 ........ga............a.... 80418389
CM000504 2639791 .............t...... 2639772
DS990735 4462675 ........ga............a.... 4462701
CH003509 82012577 ........ga............a.... 82012551
CH003509 2211634 .............t...... 2211615
CH003461 80002486 ........ga............a.... 80002460
CH003461 2329993 .............t...... 2329974
AL954800 80155960 ........ga............a.... 80155934
AL954800 2442423 .............t...... 2442404
NW_925561 47045319 ........ga............a.... 47045293
NT_026437 81235919 ........ga............a.... 81235893
NT_026437 3522295 .............t...... 3522276
NW_001838115 4462701 ........ga............a.... 4462727
NC_000014 100235919 ........ga............a.... 100235893
NC_000014 22522295 .............t...... 22522276
AC_000146 80419218 ........ga............a.... 80419192
AC_000146 2640125 .............t...... 2640106
AC_000057 80290789 ........ga............a.... 80290763
AC_000057 2385859 .............t...... 2385840
GL583074 6627769 ...................tt.. 6627747
CM000495 72679686 ...................tt.. 72679664
CM000495 99542637 .........a...g.......ag... 99542612
DS990686 6761454 ...................tt.. 6761432
CH003500 76695293 ...................tt.. 76695271
CH003500 105183137 .........a...g.......ag... 105183112
CH003452 72874487 ...................tt.. 72874465
CH003452 99797507 .........a...g.......ag... 99797482
NW_001838951 6761280 ...................tt.. 6761258
NW_922729 6765910 ...................tt.. 6765888
NT_006713 28067172 ...................tt.. 28067150
NC_000005 77472813 ...................tt.. 77472791
NC_000005 104365285 .........a...g.......ag... 104365260
AC_000137 72679389 ...................tt.. 72679367
AC_000137 99542287 .........a...g.......ag... 99542262
AC_000048 73366066 ...................tt.. 73366044
AC_000048 100308764 .........a...g.......ag... 100308739
CM000492 161051405 ..........at....t....a.... 161051380
GL582994 21531248 .........a...g.......ag... 21531273
GL583079 3070816 ...t.....aa.r............. 3070841
GL583237 1114128 ..........at....t....a.... 1114153
CM000513 59393963 ...t.....aa.g............. 59393988
DS990658 34434233 .........a...g.......ag... 34434258
DS990688 19361905 ..........at....t....a.... 19361880
DS990739 3097535 ...t.....aa.g............. 3097560
CH003497 171275434 ..........at....t....a.... 171275409
CH003518 43103325 ...t.....aa.g............. 43103300
CH003470 62683940 ...t.....aa.g............. 62683965
CH003449 160171673 ..........at....t....a.... 160171648
CT009680 64823032 ...t.....aa.a............. 64823057
NW_927711 3402516 ...t.....aa.a............. 3402541
NW_001838952 34434421 .........a...g.......ag... 34434446
NW_001838860 19362075 ..........at....t....a.... 19362050
NW_001842373 3097535 ...t.....aa.g............. 3097560
NW_921585 36970436 ..........at....t....a.... 36970411
NW_922751 4929935 .........a...g.......ag... 4929910
NT_011669 3883719 ...t.....aa.a............. 3883744
NT_034772 12679157 .........a...g.......ag... 12679132
NT_005403 19381282 ..........at....t....a.... 19381257
NC_000023 65565731 ...t.....aa.a............. 65565756
NC_000002 169171864 ..........at....t....a.... 169171839
AC_000155 59393920 ...t.....aa.g............. 59393945
AC_000134 161051530 ..........at....t....a.... 161051505
AC_000066 65913330 ...t.....aa.a............. 65913355
AC_000045 162780633 ..........at....t....a.... 162780608
CM000500 4873447 ...a..c..............a.. 4873470
DS990776 469978 ...a..c..............a.. 469955
CH003457 4987638 ...a..c..............a.. 4987661
NW_924584 4882479 ...a..c..............a.. 4882502
NT_008705 4879555 ...a..c..............a.. 4879578
NW_001837930 470025 ...a..c..............a.. 470002
NC_000010 4939555 ...a..c..............a.. 4939578
AC_000142 4873574 ...a..c..............a.. 4873597
AC_000053 4882479 ...a..c..............a.. 4882502
CM000494 154054111 ..c............c...... 154054132
GL582996 13093899 ..c............c...... 13093920
DS990657 18535440 ..c............c...... 18535461
CH003499 158191119 ..c............c...... 158191140
CH003451 155182779 ..c............c...... 155182800
NW_001838921 18535324 ..c............c...... 18535345
NW_922217 37903008 ..c............c...... 37903029
NT_016354 82850116 ..c............c...... 82850137
NC_000004 158302395 ..c............c...... 158302416
AC_000136 154053085 ..c............c...... 154053106
AC_000047 155645529 ..c............c...... 155645550
GL583092 5657049 .............t...... 5657068
DS990662 2328599 .............t...... 2328580
DS486024 2328949 .............t...... 2328930
NW_925539 2327981 .............t...... 2327962
NW_001838110 2328949 .............t...... 2328930
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 30,408,163
Number of extensions: 90
Number of successful extensions: 90
Number of sequences better than 1000.0: 76
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 90
Length of query: 27
Length of database: 31,910,071,267
Length adjustment: 21
Effective length of query: 6
Effective length of database: 31,910,039,872
Effective search space: 191460239232
Effective search space used: 191460239232
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)