BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1932
(27 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583048.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|GL583072.1| Homo sapiens unplaced genomic scaffold scaff... 28 511
gb|CM000496.1| Homo sapiens chromosome 6, whole genome shot... 28 511
gb|CM000510.1| Homo sapiens chromosome 20, whole genome sho... 28 511
gb|DS990678.1| Homo sapiens SCAF_1112675837219 genomic scaf... 28 511
gb|DS990697.1| Homo sapiens SCAF_1112675837305 genomic scaf... 28 511
gb|DS486040.1| Homo sapiens SCAF_1103279188274 genomic scaf... 28 511
gb|CH003501.1| Homo sapiens chromosome 6, whole genome shot... 28 511
gb|CH003515.1| Homo sapiens chromosome 20, whole genome sho... 28 511
gb|CH003453.1| Homo sapiens chromosome 6, whole genome shot... 28 511
gb|CH003467.1| Homo sapiens chromosome 20, whole genome sho... 28 511
ref|NW_927339.1| Homo sapiens chromosome 20 genomic contig,... 28 511
ref|NW_001838987.1| Homo sapiens chromosome 6 genomic conti... 28 511
ref|NW_001838666.1| Homo sapiens chromosome 20 genomic cont... 28 511
ref|NW_923184.1| Homo sapiens chromosome 6 genomic contig, ... 28 511
ref|NT_007299.13| Homo sapiens chromosome 6 genomic contig,... 28 511
ref|NT_011362.10| Homo sapiens chromosome 20 genomic contig... 28 511
ref|NC_000006.11| Homo sapiens chromosome 6, GRCh37.p2 prim... 28 511
ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 pri... 28 511
ref|AC_000138.1| Homo sapiens chromosome 6, alternate assem... 28 511
ref|AC_000152.1| Homo sapiens chromosome 20, alternate asse... 28 511
ref|AC_000049.1| Homo sapiens chromosome 6, alternate assem... 28 511
ref|AC_000063.1| Homo sapiens chromosome 20, alternate asse... 28 511
ref|NW_001838005.2| Homo sapiens chromosome 10 genomic cont... 28 618
ref|AC_000142.1| Homo sapiens chromosome 10, alternate asse... 28 618
gb|GL583047.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
1_0 2 aacatggactatagcaactatcccct 27
GL583048 2676749 .............at......aa... 2676724
GL583072 3398769 ..........tc...c...t...... 3398744
CM000496 87194519 ..........tc...c...t...... 87194494
CM000510 49890934 .............at......aa... 49890909
DS990678 19433283 ..........tc...c...t...... 19433258
DS990697 16211874 .............at......aa... 16211849
DS486040 19433453 ..........tc...c...t...... 19433428
CH003501 90013129 ..........tc...c...t...... 90013104
CH003515 55047788 .............at......aa... 55047763
CH003453 86594904 ..........tc...c...t...... 86594879
CH003467 49777893 .............at......aa... 49777868
NW_927339 23351275 .............at......aa... 23351250
NW_001838987 19372808 ..........tc...c...t...... 19372783
NW_001838666 16211684 .............at......aa... 16211659
NW_923184 22464899 ..........tc...c...t...... 22464874
NT_007299 28097627 ..........tc...c...t...... 28097602
NT_011362 23339569 .............at......aa... 23339544
NC_000006 89977793 ..........tc...c...t...... 89977768
NC_000020 53143477 .............at......aa... 53143452
AC_000138 87194606 ..........tc...c...t...... 87194581
AC_000152 49890835 .............at......aa... 49890810
AC_000049 90396295 ..........tc...c...t...... 90396270
AC_000063 49848166 .............at......aa... 49848141
NW_001838005 7263591 ........ac.........g.... 7263568
AC_000142 86856231 ........ac.........g.... 86856254
GL583047 10747579 ..a...........a....... 10747600
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,119,167
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 1000.0: 26
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 27
Length of database: 31,910,071,267
Length adjustment: 21
Effective length of query: 6
Effective length of database: 31,910,039,872
Effective search space: 191460239232
Effective search space used: 191460239232
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)