BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1932
         (27 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583048.1|  Homo sapiens unplaced genomic scaffold scaff...    28     511
gb|GL583072.1|  Homo sapiens unplaced genomic scaffold scaff...    28     511
gb|CM000496.1|  Homo sapiens chromosome 6, whole genome shot...    28     511
gb|CM000510.1|  Homo sapiens chromosome 20, whole genome sho...    28     511
gb|DS990678.1|  Homo sapiens SCAF_1112675837219 genomic scaf...    28     511
gb|DS990697.1|  Homo sapiens SCAF_1112675837305 genomic scaf...    28     511
gb|DS486040.1|  Homo sapiens SCAF_1103279188274 genomic scaf...    28     511
gb|CH003501.1|  Homo sapiens chromosome 6, whole genome shot...    28     511
gb|CH003515.1|  Homo sapiens chromosome 20, whole genome sho...    28     511
gb|CH003453.1|  Homo sapiens chromosome 6, whole genome shot...    28     511
gb|CH003467.1|  Homo sapiens chromosome 20, whole genome sho...    28     511
ref|NW_927339.1|  Homo sapiens chromosome 20 genomic contig,...    28     511
ref|NW_001838987.1|  Homo sapiens chromosome 6 genomic conti...    28     511
ref|NW_001838666.1|  Homo sapiens chromosome 20 genomic cont...    28     511
ref|NW_923184.1|  Homo sapiens chromosome 6 genomic contig, ...    28     511
ref|NT_007299.13|  Homo sapiens chromosome 6 genomic contig,...    28     511
ref|NT_011362.10|  Homo sapiens chromosome 20 genomic contig...    28     511
ref|NC_000006.11|  Homo sapiens chromosome 6, GRCh37.p2 prim...    28     511
ref|NC_000020.10|  Homo sapiens chromosome 20, GRCh37.p2 pri...    28     511
ref|AC_000138.1|  Homo sapiens chromosome 6, alternate assem...    28     511
ref|AC_000152.1|  Homo sapiens chromosome 20, alternate asse...    28     511
ref|AC_000049.1|  Homo sapiens chromosome 6, alternate assem...    28     511
ref|AC_000063.1|  Homo sapiens chromosome 20, alternate asse...    28     511
ref|NW_001838005.2|  Homo sapiens chromosome 10 genomic cont...    28     618
ref|AC_000142.1|  Homo sapiens chromosome 10, alternate asse...    28     618
gb|GL583047.1|  Homo sapiens unplaced genomic scaffold scaff...    28     749
1_0          2        aacatggactatagcaactatcccct 27
GL583048     2676749  .............at......aa... 2676724
GL583072     3398769  ..........tc...c...t...... 3398744
CM000496     87194519 ..........tc...c...t...... 87194494
CM000510     49890934 .............at......aa... 49890909
DS990678     19433283 ..........tc...c...t...... 19433258
DS990697     16211874 .............at......aa... 16211849
DS486040     19433453 ..........tc...c...t...... 19433428
CH003501     90013129 ..........tc...c...t...... 90013104
CH003515     55047788 .............at......aa... 55047763
CH003453     86594904 ..........tc...c...t...... 86594879
CH003467     49777893 .............at......aa... 49777868
NW_927339    23351275 .............at......aa... 23351250
NW_001838987 19372808 ..........tc...c...t...... 19372783
NW_001838666 16211684 .............at......aa... 16211659
NW_923184    22464899 ..........tc...c...t...... 22464874
NT_007299    28097627 ..........tc...c...t...... 28097602
NT_011362    23339569 .............at......aa... 23339544
NC_000006    89977793 ..........tc...c...t...... 89977768
NC_000020    53143477 .............at......aa... 53143452
AC_000138    87194606 ..........tc...c...t...... 87194581
AC_000152    49890835 .............at......aa... 49890810
AC_000049    90396295 ..........tc...c...t...... 90396270
AC_000063    49848166 .............at......aa... 49848141
NW_001838005 7263591   ........ac.........g....  7263568
AC_000142    86856231  ........ac.........g....  86856254
GL583047     10747579 ..a...........a.......     10747600
  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,119,167
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 1000.0: 26
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 26
Length of query: 27
Length of database: 31,910,071,267
Length adjustment: 21
Effective length of query: 6
Effective length of database: 31,910,039,872
Effective search space: 191460239232
Effective search space used: 191460239232
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)