BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1933
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583015.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000504.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|DS990679.1| Homo sapiens SCAF_1112675836899 genomic scaf... 28 907
gb|CH003509.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|CH003461.1| Homo sapiens chromosome 14, whole genome sho... 28 907
emb|AL954800.2| Human chromosome 14 complete sequence 28 907
ref|NW_925539.1| Homo sapiens chromosome 14 genomic contig,... 28 907
ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig,... 28 907
ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig... 28 907
ref|NW_001838111.1| Homo sapiens chromosome 14 genomic cont... 28 907
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 907
ref|NC_000014.8| Homo sapiens chromosome 14, GRCh37.p2 prim... 28 907
ref|AC_000146.1| Homo sapiens chromosome 14, alternate asse... 28 907
ref|AC_000057.1| Homo sapiens chromosome 14, alternate asse... 28 907
1_0 2 aagagagtcaatccgttctt 21
GL583015 9784669 .............t...... 9784650
CM000504 23430967 .............t...... 23430986
DS990679 2131864 .............t...... 2131883
CH003509 23053750 .............t...... 23053769
CH003461 23084037 .............t...... 23084056
AL954800 23240832 .............t...... 23240851
NW_925539 23123329 .............t...... 23123348
NT_005403 47499142 .............t...... 47499123
NT_026437 24320794 .............t...... 24320813
NW_001838111 2132022 .............t...... 2132041
NC_000002 197289724 .............t...... 197289705
NC_000014 43320794 .............t...... 43320813
AC_000146 23431032 .............t...... 23431051
AC_000057 23181207 .............t...... 23181226
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 17,738,098
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 1000.0: 14
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 14
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)