BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1934
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582980.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|GL583088.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 29 348
gb|DS990775.1| Homo sapiens SCAF_1112675837277 genomic scaf... 29 348
gb|CH003507.1| Homo sapiens chromosome 12, whole genome sho... 29 348
gb|CH003513.1| Homo sapiens chromosome 18, whole genome sho... 29 348
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 29 348
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 29 348
ref|NW_001838953.2| Homo sapiens chromosome 5 genomic conti... 29 348
ref|NW_922784.1| Homo sapiens chromosome 5 genomic contig, ... 29 348
ref|NW_925295.1| Homo sapiens chromosome 12 genomic contig,... 29 348
ref|NT_029289.11| Homo sapiens chromosome 5 genomic contig,... 29 348
ref|NT_009759.16| Homo sapiens chromosome 12 genomic contig... 29 348
ref|NW_001838049.2| Homo sapiens chromosome 12 genomic cont... 29 348
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 29 348
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 29 348
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 29 348
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 29 348
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 29 348
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 29 348
gb|GL583026.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|DS990733.1| Homo sapiens SCAF_1112675837080 genomic scaf... 28 907
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 907
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 907
ref|NW_001839128.2| Homo sapiens chromosome 8 genomic conti... 28 907
ref|NW_923907.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NT_167187.1| Homo sapiens chromosome 8 genomic contig, ... 28 907
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 907
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 907
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 907
1_0 1 aatatcaatcgtggttatctt 21
GL582980 20283179 .....g............... 20283199
GL583088 3905054 .........g........... 3905034
CM000502 3687094 .........g........... 3687114
DS990775 1757535 .........g........... 1757515
CH003507 3737079 .........g........... 3737099
CH003513 50624171 .........g........... 50624151
CH003452 143961738 .....g............... 143961758
CH003459 3786009 .........g........... 3786029
NW_001838953 8490590 .....g............... 8490570
NW_922784 20354617 .....g............... 20354637
NW_925295 3648156 .........g........... 3648176
NT_029289 7807489 .....g............... 7807509
NT_009759 3770916 .........g........... 3770936
NW_001838049 1757482 .........g........... 1757462
NC_000005 146644562 .....g............... 146644582
NC_000012 3830916 .........g........... 3830936
AC_000137 141791655 .....g............... 141791675
AC_000144 3687193 .........g........... 3687213
AC_000048 142726601 .....g............... 142726621
AC_000055 5444574 .........g........... 5444594
GL583026 2697684 .....t.............. 2697703
CM000498 29745614 .....t.............. 29745633
DS990733 7565171 .....t.............. 7565152
CH003503 39737603 .....t.............. 39737622
CH003455 29874177 .....t.............. 29874196
NW_001839128 7565288 .....t.............. 7565269
NW_923907 18727161 .....t.............. 18727180
NT_167187 19058829 .....t.............. 19058848
NC_000008 31200683 .....t.............. 31200702
AC_000140 29745718 .....t.............. 29745737
AC_000051 30159323 .....t.............. 30159342
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 16,237,695
Number of extensions: 31
Number of successful extensions: 31
Number of sequences better than 1000.0: 31
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 31
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)