BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1951
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000492.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|GL582986.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|DS990734.1|  Homo sapiens SCAF_1112675837251 genomic scaf...    28     907
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    28     907
ref|NW_927719.1|  Homo sapiens chromosome 2 genomic contig, ...    28     907
ref|NW_001838768.1|  Homo sapiens chromosome 2 genomic conti...    28     907
ref|NT_022184.15|  Homo sapiens chromosome 2 genomic contig,...    28     907
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    28     907
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    28     907
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    28     907

1_0          1        tcctactgttcaagcctcca 20
CM000492     26806305 .............a...... 26806286
GL582986     24420755 .............a...... 24420774
DS990734     5896343  .............a...... 5896324
CH003497     28838273 .............a...... 28838254
CH003449     26769218 .............a...... 26769199
NW_927719    26842391 .............a...... 26842372
NW_001838768 5896327  .............a...... 5896308
NT_022184    5886220  .............a...... 5886201
NC_000002    27064333 .............a...... 27064314
AC_000134    26806364 .............a...... 26806345
AC_000045    26910456 .............a...... 26910437

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,537,647
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)