BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1957
         (22 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NW_926894.1|  Homo sapiens chromosome 17 genomic contig,...    28     749
ref|NW_001838448.1|  Homo sapiens chromosome 17 genomic cont...    28     749
ref|NT_010783.15|  Homo sapiens chromosome 17 genomic contig...    28     749
ref|NC_000017.10|  Homo sapiens chromosome 17, GRCh37.p2 pri...    28     749
ref|AC_000149.1|  Homo sapiens chromosome 17, alternate asse...    28     749
ref|AC_000060.1|  Homo sapiens chromosome 17, alternate asse...    28     749

1_0          1        aaagctcatcggaactgacaat 22
NW_926894    3515662  .t.......g............ 3515641
NW_001838448 4361044  .t.......g............ 4361023
NT_010783    14397546 .t.......g............ 14397525
NC_000017    49123394 .t.......g............ 49123373
AC_000149    44493064 .t.......g............ 44493043
AC_000060    45584640 .t.......g............ 45584619

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 16,000,689
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 1000.0: 6
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 6
Length of query: 22
Length of database: 31,910,071,267
Length adjustment: 16
Effective length of query: 6
Effective length of database: 31,910,047,347
Effective search space: 191460284082
Effective search space used: 191460284082
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)