BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1982
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 29 422
gb|GL583061.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|GL583062.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|CM000501.1| Homo sapiens chromosome 11, whole genome sho... 29 422
gb|DS990704.1| Homo sapiens SCAF_1112675836703 genomic scaf... 29 422
gb|DS990740.1| Homo sapiens SCAF_1112675836367 genomic scaf... 29 422
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 29 422
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 29 422
ref|NW_927719.1| Homo sapiens chromosome 2 genomic contig, ... 29 422
ref|NW_001838766.1| Homo sapiens chromosome 2 genomic conti... 29 422
ref|NT_005334.16| Homo sapiens chromosome 2 genomic contig,... 29 422
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 29 422
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 29 422
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 29 422
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|GL582989.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583006.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583024.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|GL583158.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000503.1| Homo sapiens chromosome 13, whole genome sho... 28 907
gb|CM000510.1| Homo sapiens chromosome 20, whole genome sho... 28 907
gb|DS990655.1| Homo sapiens SCAF_1112675837088 genomic scaf... 28 907
gb|DS990664.1| Homo sapiens SCAF_1112675837102 genomic scaf... 28 907
gb|DS990683.1| Homo sapiens SCAF_1112675837311 genomic scaf... 28 907
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|DS990755.1| Homo sapiens SCAF_1112675837195 genomic scaf... 28 907
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003499.1| Homo sapiens chromosome 4, whole genome shot... 28 907
gb|CH003508.1| Homo sapiens chromosome 13, whole genome sho... 28 907
gb|CH003513.1| Homo sapiens chromosome 18, whole genome sho... 28 907
gb|CH003515.1| Homo sapiens chromosome 20, whole genome sho... 28 907
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 907
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 907
gb|CH003460.1| Homo sapiens chromosome 13, whole genome sho... 28 907
gb|CH003467.1| Homo sapiens chromosome 20, whole genome sho... 28 907
ref|NW_927317.1| Homo sapiens chromosome 20 genomic contig,... 28 907
ref|NW_926128.1| Homo sapiens chromosome 1 genomic contig, ... 28 907
ref|NW_001838877.2| Homo sapiens chromosome 3 genomic conti... 28 907
ref|NW_001838863.1| Homo sapiens chromosome 2 genomic conti... 28 907
ref|NW_001838533.2| Homo sapiens chromosome 1 genomic conti... 28 907
ref|NW_001838652.1| Homo sapiens chromosome 20 genomic cont... 28 907
ref|NW_921585.1| Homo sapiens chromosome 2 genomic contig, ... 28 907
ref|NW_921651.1| Homo sapiens chromosome 3 genomic contig, ... 28 907
ref|NT_022517.18| Homo sapiens chromosome 3 genomic contig,... 28 907
ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig,... 28 907
ref|NT_011387.8| Homo sapiens chromosome 20 genomic contig,... 28 907
ref|NT_004487.19| Homo sapiens chromosome 1 genomic contig,... 28 907
ref|NT_024524.14| Homo sapiens chromosome 13 genomic contig... 28 907
ref|NW_001838080.2| Homo sapiens chromosome 13 genomic cont... 28 907
ref|NW_925495.1| Homo sapiens chromosome 13 genomic contig,... 28 907
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 907
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 907
ref|NC_000020.10| Homo sapiens chromosome 20, GRCh37.p2 pri... 28 907
ref|NC_000013.10| Homo sapiens chromosome 13, GRCh37.p2 pri... 28 907
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000152.1| Homo sapiens chromosome 20, alternate asse... 28 907
ref|AC_000145.1| Homo sapiens chromosome 13, alternate asse... 28 907
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 907
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 907
ref|AC_000063.1| Homo sapiens chromosome 20, alternate asse... 28 907
ref|AC_000056.1| Homo sapiens chromosome 13, alternate asse... 28 907
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 907
1_0 2 cacccaaatgtacaccaatg 21
CM000492 9890256 ................... 9890238
GL583061 8276298 ................... 8276280
GL583062 6164574 ................... 6164592
CM000501 82339034 ................... 82339016
DS990704 1635863 ................... 1635881
DS990740 2135486 ................... 2135468
CH003497 10119448 ................... 10119430
CH003449 9856791 ................... 9856773
NW_927719 9887498 ................... 9887480
NW_001838766 2135547 ................... 2135529
NT_005334 4920850 ................... 4920832
NC_000002 10039638 ................... 10039620
NC_000002 181391859 ..............t..... 181391840
AC_000134 9890417 ................... 9890399
AC_000134 173246992 ..............t..... 173246973
AC_000045 9955563 ................... 9955545
AC_000045 174986208 ..............t..... 174986189
CM000491 156037863 ...........c........ 156037844
CM000493 64747414 ...........c........ 64747395
GL582989 10714734 ...........c........ 10714753
GL583006 13811301 ..............t..... 13811320
GL583024 4401626 ...........c........ 4401645
GL583158 2252188 ...........t........ 2252169
CM000503 36213774 ...........t........ 36213793
CM000510 19302056 ...........c........ 19302037
DS990655 1520216 ...........c........ 1520235
DS990664 21066652 ...........c........ 21066671
DS990683 19302056 ...........c........ 19302037
CH003496 163557291 ...........c........ 163557272
DS990755 5036586 ...........t........ 5036567
CH003498 69420820 ...........c........ 69420801
CH003499 101752486 ...........c........ 101752467
CH003508 29445440 ...........t........ 29445421
CH003513 42621754 ...........c........ 42621773
CH003515 20928078 ...........c........ 20928059
CH003448 157737750 ...........c........ 157737731
CH003450 64838189 ...........c........ 64838170
CH003460 36081373 ...........t........ 36081392
CH003467 19288622 ...........c........ 19288603
CH003467 39091152 ...........c........ 39091171
NW_927317 19271005 ...........c........ 19270986
NW_926128 23169162 ...........c........ 23169143
NW_001838877 1520096 ...........c........ 1520115
NW_001838863 6803298 ..............t..... 6803279
NW_001838533 21066255 ...........c........ 21066274
NW_001838652 19302165 ...........c........ 19302146
NW_921585 49176011 ..............t..... 49175992
NW_921651 64667081 ...........c........ 64667062
NT_022517 64590367 ...........c........ 64590348
NT_005403 31601277 ..............t..... 31601258
NT_011387 19279682 ...........c........ 19279663
NT_004487 36292051 ...........c........ 36292032
NT_024524 36480201 ...........t........ 36480220
NW_001838080 5036535 ...........t........ 5036516
NW_925495 2343352 ...........t........ 2343371
NC_000001 184803409 ...........c........ 184803390
NC_000003 64650367 ...........c........ 64650348
NC_000020 19339682 ...........c........ 19339663
NC_000013 55500201 ...........t........ 55500220
AC_000135 64747566 ...........c........ 64747547
AC_000152 19302165 ...........c........ 19302146
AC_000145 36214610 ...........t........ 36214629
AC_000133 156038996 ...........c........ 156038977
AC_000046 64667081 ...........c........ 64667062
AC_000063 19413829 ...........c........ 19413810
AC_000056 36486789 ...........t........ 36486808
AC_000044 157914403 ...........c........ 157914384
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,097,972
Number of extensions: 68
Number of successful extensions: 68
Number of sequences better than 1000.0: 64
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 68
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)