BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1983
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583113.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|CM000499.1| Homo sapiens chromosome 9, whole genome shot... 29 348
gb|DS990696.1| Homo sapiens SCAF_1112675837234 genomic scaf... 29 348
gb|CH003504.1| Homo sapiens chromosome 9, whole genome shot... 29 348
gb|CH003456.1| Homo sapiens chromosome 9, whole genome shot... 29 348
ref|NW_001839236.2| Homo sapiens chromosome 9 genomic conti... 29 348
ref|NW_924539.1| Homo sapiens chromosome 9 genomic contig, ... 29 348
ref|NT_008470.19| Homo sapiens chromosome 9 genomic contig,... 29 348
ref|NC_000009.11| Homo sapiens chromosome 9, GRCh37.p2 prim... 29 348
ref|AC_000141.1| Homo sapiens chromosome 9, alternate assem... 29 348
ref|AC_000052.1| Homo sapiens chromosome 9, alternate assem... 29 348
gb|GL583078.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000504.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|DS990679.1| Homo sapiens SCAF_1112675836899 genomic scaf... 28 907
gb|CH003509.1| Homo sapiens chromosome 14, whole genome sho... 28 907
gb|CH003461.1| Homo sapiens chromosome 14, whole genome sho... 28 907
emb|AL954800.2| Human chromosome 14 complete sequence 28 907
ref|NW_925561.1| Homo sapiens chromosome 14 genomic contig,... 28 907
ref|NT_026437.12| Homo sapiens chromosome 14 genomic contig... 28 907
ref|NW_001838111.1| Homo sapiens chromosome 14 genomic cont... 28 907
ref|NC_000014.8| Homo sapiens chromosome 14, GRCh37.p2 prim... 28 907
ref|AC_000146.1| Homo sapiens chromosome 14, alternate asse... 28 907
ref|AC_000057.1| Homo sapiens chromosome 14, alternate asse... 28 907
1_0 1 cataccctcctgtttaacatc 21
GL583113 1106107 ......t.............. 1106087
CM000499 74294368 ......t.............. 74294388
DS990696 15084794 ......t.............. 15084774
CH003504 79156465 ......t.............. 79156485
CH003456 72703580 ......t.............. 72703600
NW_001839236 15084816 ......t.............. 15084796
NW_924539 4918217 ......t.............. 4918237
NT_008470 33859537 ......t.............. 33859557
NC_000009 104695005 ......t.............. 104695025
AC_000141 74294925 ......t.............. 74294945
AC_000052 75208513 ......t.............. 75208533
GL583078 2500221 ............g....... 2500240
CM000504 38531350 ............g....... 38531331
DS990679 17232247 ............g....... 17232228
CH003509 38250991 ............g....... 38250972
CH003461 38102531 ............g....... 38102512
AL954800 38285230 ............g....... 38285211
NW_925561 5169694 ............g....... 5169675
NT_026437 39365189 ............g....... 39365170
NW_001838111 17232185 ............g....... 17232166
NC_000014 58365189 ............g....... 58365170
AC_000146 38531195 ............g....... 38531176
AC_000057 38415164 ............g....... 38415145
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 29,409,970
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 1000.0: 23
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 23
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)