BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi1986
(21 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583239.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|CM000502.1| Homo sapiens chromosome 12, whole genome sho... 29 348
gb|DS990845.1| Homo sapiens SCAF_1112675837284 genomic scaf... 29 348
gb|CH003507.1| Homo sapiens chromosome 12, whole genome sho... 29 348
gb|CH003459.1| Homo sapiens chromosome 12, whole genome sho... 29 348
ref|NW_925351.1| Homo sapiens chromosome 12 genomic contig,... 29 348
ref|NT_029419.12| Homo sapiens chromosome 12 genomic contig... 29 348
ref|NW_001838056.1| Homo sapiens chromosome 12 genomic cont... 29 348
ref|NC_000012.11| Homo sapiens chromosome 12, GRCh37.p2 pri... 29 348
ref|AC_000144.1| Homo sapiens chromosome 12, alternate asse... 29 348
ref|AC_000055.1| Homo sapiens chromosome 12, alternate asse... 29 348
gb|GL582995.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000508.1| Homo sapiens chromosome 18, whole genome sho... 28 907
gb|DS990674.1| Homo sapiens SCAF_1112675837072 genomic scaf... 28 907
gb|CH003513.1| Homo sapiens chromosome 18, whole genome sho... 28 907
gb|CH003465.1| Homo sapiens chromosome 18, whole genome sho... 28 907
ref|NW_927095.1| Homo sapiens chromosome 18 genomic contig,... 28 907
ref|NW_001838467.2| Homo sapiens chromosome 18 genomic cont... 28 907
ref|NT_010966.14| Homo sapiens chromosome 18 genomic contig... 28 907
ref|NC_000018.9| Homo sapiens chromosome 18, GRCh37.p2 prim... 28 907
ref|AC_000150.1| Homo sapiens chromosome 18, alternate asse... 28 907
ref|AC_000061.1| Homo sapiens chromosome 18, alternate asse... 28 907
1_0 1 ggatgatcctgatgactcatt 21
GL583239 1218276 ...a................. 1218256
CM000502 36309241 ...a................. 36309261
DS990845 1666365 ...a................. 1666385
CH003507 47003461 ...a................. 47003441
CH003459 36510292 ...a................. 36510312
NW_925351 1633726 ...a................. 1633746
NT_029419 1426668 ...a................. 1426688
NW_001838056 1666139 ...a................. 1666159
NC_000012 39283362 ...a................. 39283382
AC_000144 36308976 ...a................. 36308996
AC_000055 38087820 ...a................. 38087840
GL582995 21140002 .........c.......... 21140021
CM000508 36617120 .........c.......... 36617139
DS990674 4783575 .........c.......... 4783556
CH003513 40981710 .........c.......... 40981729
CH003465 35469682 .........c.......... 35469701
NW_927095 21234873 .........c.......... 21234892
NW_001838467 4783690 .........c.......... 4783671
NT_010966 21247015 .........c.......... 21247034
NC_000018 39757913 .........c.......... 39757932
AC_000150 36617112 .........c.......... 36617131
AC_000061 36566468 .........c.......... 36566487
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 20,749,939
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 1000.0: 22
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 22
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)