BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi1997
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000491.1|  Homo sapiens chromosome 1, whole genome shot...    29     348
gb|GL583007.1|  Homo sapiens unplaced genomic scaffold scaff...    29     348
gb|DS990691.1|  Homo sapiens SCAF_1112675837255 genomic scaf...    29     348
gb|CH003496.1|  Homo sapiens chromosome 1, whole genome shot...    29     348
gb|CH003448.1|  Homo sapiens chromosome 1, whole genome shot...    29     348
ref|NW_001838589.2|  Homo sapiens chromosome 1 genomic conti...    29     348
ref|NW_921795.1|  Homo sapiens chromosome 1 genomic contig, ...    29     348
ref|NT_032977.9|  Homo sapiens chromosome 1 genomic contig, ...    29     348
ref|NC_000001.10|  Homo sapiens chromosome 1, GRCh37.p2 prim...    29     348
ref|AC_000133.1|  Homo sapiens chromosome 1, alternate assem...    29     348
ref|AC_000044.1|  Homo sapiens chromosome 1, alternate assem...    29     348

1_0          1         ttaatagttaatagcgtactt 21
CM000491     99205521  ...............t..... 99205501
GL583007     16963656  ...............t..... 16963636
DS990691     3023890   ...............t..... 3023910
CH003496     101421302 ...............t..... 101421282
CH003448     100092066 ...............t..... 100092046
NW_001838589 3023996   ...............t..... 3024016
NW_921795    17149870  ...............t..... 17149850
NT_032977    71053757  ...............t..... 71053737
NC_000001    101081839 ...............t..... 101081819
AC_000133    99206013  ...............t..... 99205993
AC_000044    99342976  ...............t..... 99342956

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 16,287,051
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)