BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2016
(22 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL583308.1| Homo sapiens unplaced genomic scaffold scaff... 29 348
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 29 348
gb|DS990938.1| Homo sapiens SCAF_1112675837206 genomic scaf... 29 348
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 29 348
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 29 348
ref|NW_922596.1| Homo sapiens chromosome 5 genomic contig, ... 29 348
ref|NT_006576.16| Homo sapiens chromosome 5 genomic contig,... 29 348
ref|NW_001838932.2| Homo sapiens chromosome 5 genomic conti... 29 348
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 29 348
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 29 348
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 29 348
gb|GL582994.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|DS990658.1| Homo sapiens SCAF_1112675837357 genomic scaf... 29 422
ref|NW_001838952.2| Homo sapiens chromosome 5 genomic conti... 29 422
ref|NW_922751.1| Homo sapiens chromosome 5 genomic contig, ... 29 422
ref|NT_034772.6| Homo sapiens chromosome 5 genomic contig, ... 29 422
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|CM000492.1| Homo sapiens chromosome 2, whole genome shot... 28 749
gb|CM000493.1| Homo sapiens chromosome 3, whole genome shot... 28 749
gb|GL582985.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583000.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583001.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583039.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583057.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583070.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583108.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583161.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583185.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583186.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583197.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|GL583235.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|CM000497.1| Homo sapiens chromosome 7, whole genome shot... 28 749
gb|CM000498.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CM000503.1| Homo sapiens chromosome 13, whole genome sho... 28 749
gb|CM000507.1| Homo sapiens chromosome 17, whole genome sho... 28 749
gb|CM000509.1| Homo sapiens chromosome 19, whole genome sho... 28 749
gb|CM000513.1| Homo sapiens chromosome X, whole genome shot... 28 749
gb|DS990653.1| Homo sapiens SCAF_1112675837330 genomic scaf... 28 749
gb|DS990659.1| Homo sapiens SCAF_1112675837198 genomic scaf... 28 749
gb|DS990664.1| Homo sapiens SCAF_1112675837102 genomic scaf... 28 749
gb|DS990667.1| Homo sapiens SCAF_1112675837322 genomic scaf... 28 749
gb|DS990669.1| Homo sapiens SCAF_1112675837377 genomic scaf... 28 749
gb|DS990692.1| Homo sapiens SCAF_1112675837292 genomic scaf... 28 749
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|CH003502.1| Homo sapiens chromosome 7, whole genome shot... 28 749
gb|DS990752.1| Homo sapiens SCAF_1112675837083 genomic scaf... 28 749
gb|DS990798.1| Homo sapiens SCAF_1112675837108 genomic scaf... 28 749
gb|DS990802.1| Homo sapiens SCAF_1112675835043 genomic scaf... 28 749
gb|DS990823.1| Homo sapiens SCAF_1112675837313 genomic scaf... 28 749
gb|DS990837.1| Homo sapiens SCAF_1112675837145 genomic scaf... 28 749
gb|DS990859.1| Homo sapiens SCAF_1112675837181 genomic scaf... 28 749
gb|DS990899.1| Homo sapiens SCAF_1112675836985 genomic scaf... 28 749
gb|DS486054.1| Homo sapiens SCAF_1103279188347 genomic scaf... 28 749
gb|CH003497.1| Homo sapiens chromosome 2, whole genome shot... 28 749
gb|CH003498.1| Homo sapiens chromosome 3, whole genome shot... 28 749
gb|CH003503.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CH003505.1| Homo sapiens chromosome 10, whole genome sho... 28 749
gb|CH003508.1| Homo sapiens chromosome 13, whole genome sho... 28 749
gb|CH003512.1| Homo sapiens chromosome 17, whole genome sho... 28 749
gb|CH003514.1| Homo sapiens chromosome 19, whole genome sho... 28 749
gb|CH003518.1| Homo sapiens chromosome X, whole genome shot... 28 749
gb|CH003470.1| Homo sapiens chromosome X, whole genome shot... 28 749
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 28 749
gb|CH003449.1| Homo sapiens chromosome 2, whole genome shot... 28 749
gb|CH003450.1| Homo sapiens chromosome 3, whole genome shot... 28 749
gb|CH003454.1| Homo sapiens chromosome 7, whole genome shot... 28 749
gb|CH003455.1| Homo sapiens chromosome 8, whole genome shot... 28 749
gb|CH003460.1| Homo sapiens chromosome 13, whole genome sho... 28 749
gb|CH003466.1| Homo sapiens chromosome 19, whole genome sho... 28 749
tpg|BL000002.1| TPA: Homo sapiens chromosome 7 28 749
emb|CT009680.1| Human chromosome X complete sequence 28 749
ref|NW_927206.1| Homo sapiens chromosome 19 genomic contig,... 28 749
ref|NW_926128.1| Homo sapiens chromosome 1 genomic contig, ... 28 749
ref|NW_927726.1| Homo sapiens chromosome X genomic contig, ... 28 749
ref|NW_001838884.2| Homo sapiens chromosome 3 genomic conti... 28 749
ref|NW_001839136.1| Homo sapiens chromosome 8 genomic conti... 28 749
ref|NW_001838533.2| Homo sapiens chromosome 1 genomic conti... 28 749
ref|NW_001839003.1| Homo sapiens chromosome 7 genomic conti... 28 749
ref|NW_001838579.2| Homo sapiens chromosome 1 genomic conti... 28 749
ref|NW_001838865.2| Homo sapiens chromosome 2 genomic conti... 28 749
ref|NW_001839139.2| Homo sapiens chromosome 8 genomic conti... 28 749
ref|NW_001842411.2| Homo sapiens chromosome X genomic conti... 28 749
ref|NW_001839088.2| Homo sapiens chromosome 7 genomic conti... 28 749
ref|NW_001838494.1| Homo sapiens chromosome 19 genomic cont... 28 749
ref|NW_921807.1| Homo sapiens chromosome 3 genomic contig, ... 28 749
ref|NW_921351.1| Homo sapiens chromosome 1 genomic contig, ... 28 749
ref|NW_923751.1| Homo sapiens chromosome 7 genomic contig, ... 28 749
ref|NW_923984.1| Homo sapiens chromosome 8 genomic contig, ... 28 749
ref|NW_921618.1| Homo sapiens chromosome 2 genomic contig, ... 28 749
ref|NW_923240.1| Homo sapiens chromosome 7 genomic contig, ... 28 749
ref|NT_011681.16| Homo sapiens chromosome X genomic contig,... 28 749
ref|NT_008046.16| Homo sapiens chromosome 8 genomic contig,... 28 749
ref|NT_007914.15| Homo sapiens chromosome 7 genomic contig,... 28 749
ref|NT_007819.17| Homo sapiens chromosome 7 genomic contig,... 28 749
ref|NT_005612.16| Homo sapiens chromosome 3 genomic contig,... 28 749
ref|NT_005403.17| Homo sapiens chromosome 2 genomic contig,... 28 749
ref|NT_004487.19| Homo sapiens chromosome 1 genomic contig,... 28 749
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 28 749
ref|NT_011109.16| Homo sapiens chromosome 19 genomic contig... 28 749
ref|NT_010783.15| Homo sapiens chromosome 17 genomic contig... 28 749
ref|NT_024524.14| Homo sapiens chromosome 13 genomic contig... 28 749
ref|NW_001838081.1| Homo sapiens chromosome 13 genomic cont... 28 749
ref|NW_001838590.2| Homo sapiens chromosome 1 genomic conti... 28 749
ref|NT_079596.2| Homo sapiens chromosome 7 genomic contig, ... 28 749
ref|NT_079592.2| Homo sapiens chromosome 7 genomic contig, ... 28 749
ref|NW_925495.1| Homo sapiens chromosome 13 genomic contig,... 28 749
ref|NW_922017.1| Homo sapiens chromosome 1 genomic contig, ... 28 749
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 28 749
ref|NC_000023.10| Homo sapiens chromosome X, GRCh37.p2 prim... 28 749
ref|NC_000008.10| Homo sapiens chromosome 8, GRCh37.p2 prim... 28 749
ref|NC_000007.13| Homo sapiens chromosome 7, GRCh37.p2 prim... 28 749
ref|NC_000003.11| Homo sapiens chromosome 3, GRCh37.p2 prim... 28 749
ref|NC_000002.11| Homo sapiens chromosome 2, GRCh37.p2 prim... 28 749
ref|NC_000019.9| Homo sapiens chromosome 19, GRCh37.p2 prim... 28 749
ref|NC_000017.10| Homo sapiens chromosome 17, GRCh37.p2 pri... 28 749
ref|NC_000013.10| Homo sapiens chromosome 13, GRCh37.p2 pri... 28 749
ref|AC_000155.1| Homo sapiens chromosome X, alternate assem... 28 749
ref|AC_000140.1| Homo sapiens chromosome 8, alternate assem... 28 749
ref|AC_000139.1| Homo sapiens chromosome 7, alternate assem... 28 749
ref|AC_000135.1| Homo sapiens chromosome 3, alternate assem... 28 749
ref|AC_000134.1| Homo sapiens chromosome 2, alternate assem... 28 749
ref|AC_000151.1| Homo sapiens chromosome 19, alternate asse... 28 749
ref|AC_000145.1| Homo sapiens chromosome 13, alternate asse... 28 749
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 28 749
ref|AC_000066.1| Homo sapiens chromosome X, alternate assem... 28 749
ref|AC_000051.1| Homo sapiens chromosome 8, alternate assem... 28 749
ref|AC_000068.1| Homo sapiens chromosome 7, alternate assem... 28 749
ref|AC_000050.1| Homo sapiens chromosome 7, alternate assem... 28 749
ref|AC_000046.1| Homo sapiens chromosome 3, alternate assem... 28 749
ref|AC_000045.1| Homo sapiens chromosome 2, alternate assem... 28 749
ref|AC_000062.1| Homo sapiens chromosome 19, alternate asse... 28 749
ref|AC_000056.1| Homo sapiens chromosome 13, alternate asse... 28 749
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 28 749
1_0 1 aagtctttagggtcttctacct 22
GL583308 282196 ............t........ 282176
CM000495 35369997 ............t........ 35370017
CM000495 108186555 ................... 108186537
DS990938 287355 ............t........ 287335
CH003500 36469806 ............t........ 36469826
CH003500 115552068 ................... 115552050
CH003452 35142528 ............t........ 35142548
CH003452 108410474 ................... 108410456
NW_922596 1013781 ............t........ 1013801
NT_006576 35411146 ............t........ 35411166
NW_001838932 287338 ............t........ 287318
NC_000005 35421146 ............t........ 35421166
NC_000005 113003834 ................... 113003816
AC_000137 35369952 ............t........ 35369972
AC_000137 108186147 ................... 108186129
AC_000048 35303267 ............t........ 35303287
AC_000048 108951073 ................... 108951055
GL582994 12963681 ................... 12963699
DS990658 25790315 ................... 25790333
NW_001838952 25790561 ................... 25790579
NW_922751 13572244 ................... 13572226
NT_034772 21317706 ................... 21317688
CM000491 48967594 .............t......a. 48967615
CM000491 106213039 .g.....c.............. 106213018
CM000491 140827122 .............t......a. 140827101
CM000492 215838023 .............t......a. 215838002
CM000493 142145862 ....a...........t..... 142145883
CM000493 189808404 .............t......a. 189808383
GL582985 20899652 ..a.................a. 20899631
GL583000 4604689 .............t......a. 4604668
GL583001 2756899 .............t......a. 2756920
GL583039 4950887 .............t......a. 4950908
GL583057 1869701 ....a...........t..... 1869680
GL583070 8271006 .............t.....g.. 8271027
GL583108 3672164 .............t.....g.. 3672185
GL583161 496874 .g.....c.............. 496895
GL583185 1653423 .............t......a. 1653444
GL583186 1185267 .............t......g. 1185288
GL583197 1989528 ..a..........t........ 1989549
GL583235 1320727 .............t......a. 1320706
CM000497 8723197 .............t......a. 8723218
CM000497 144293276 ..a..........t........ 144293255
CM000498 117798681 ..a.................a. 117798660
CM000498 133178391 .............t.....g.. 133178370
CM000503 41320707 .............t.....g.. 41320686
CM000507 35084546 .............t......a. 35084567
CM000509 31523432 .............t......g. 31523453
CM000513 133719547 .............t......g. 133719568
DS990653 1620055 .............t......a. 1620076
DS990653 49282597 ....a...........t..... 49282576
DS990659 35740701 ..a.................a. 35740680
DS990664 36277393 .............t......a. 36277414
DS990667 2566004 .............t......a. 2566025
DS990669 32826565 .............t......a. 32826544
DS990692 5422723 .............t.....g.. 5422702
CH003496 48648789 .............t......a. 48648810
CH003496 108533783 .g.....c.............. 108533762
CH003496 143712330 .............t......a. 143712309
CH003502 7373394 .............t......a. 7373415
DS990752 2522196 .............t......a. 2522217
DS990798 508245 .g.....c.............. 508266
DS990802 1889613 .............t.....g.. 1889634
DS990823 2495147 .............t......g. 2495126
DS990837 468635 .............t......a. 468614
DS990859 2018706 ..a..........t........ 2018727
DS990899 135498 .............t......g. 135519
DS486054 5422912 .............t.....g.. 5422891
CH003497 229387494 .............t......a. 229387473
CH003498 149937682 ....a...........t..... 149937661
CH003498 200348606 .............t......a. 200348585
CH003503 123172781 ..a.................a. 123172760
CH003503 138336072 .............t.....g.. 138336051
CH003505 119528668 .....c..g............. 119528647
CH003508 43802603 .............t.....g.. 43802582
CH003512 40137471 .............t......a. 40137450
CH003514 35314441 .............t......g. 35314462
CH003518 112912575 .............t......g. 112912554
CH003470 139738869 .............t......g. 139738890
CH003448 50074293 .............t......a. 50074314
CH003448 107431482 .g.....c.............. 107431461
CH003448 142561335 .............t......a. 142561314
CH003449 215027647 .............t......a. 215027626
CH003450 142569982 ....a...........t..... 142570003
CH003450 190444842 .............t......a. 190444821
CH003454 8949677 .............t......a. 8949698
CH003454 145439182 ..a..........t........ 145439161
CH003455 117993573 ..a.................a. 117993552
CH003455 133355643 .............t.....g.. 133355622
CH003460 41234432 .............t.....g.. 41234411
CH003466 31940904 .............t......g. 31940925
BL000002 8581006 .............t......a. 8581027
BL000002 149774053 ..a..........t........ 149774032
CT009680 143733851 .............t......g. 143733872
NW_927206 7300453 .............t......g. 7300474
NW_926128 7969995 .............t......a. 7969974
NW_927726 1188249 .............t......g. 1188270
NW_001838884 1620099 .............t......a. 1620120
NW_001838884 49283450 ....a...........t..... 49283429
NW_001839136 35740224 ..a.................a. 35740203
NW_001838533 36277107 .............t......a. 36277128
NW_001839003 2566117 .............t......a. 2566138
NW_001838579 32826977 .............t......a. 32826956
NW_001838865 2522180 .............t......a. 2522201
NW_001839139 1889615 .............t.....g.. 1889636
NW_001842411 2495139 .............t......g. 2495118
NW_001839088 2018704 ..a..........t........ 2018725
NW_001838494 135477 .............t......g. 135498
NW_921807 51381744 ....a...........t..... 51381765
NW_921807 99022502 .............t......a. 99022481
NW_921351 24996681 .............t......a. 24996702
NW_923751 495595 ..a..........t........ 495574
NW_923984 35627057 ..a.................a. 35627036
NW_923984 50994316 .............t.....g.. 50994295
NW_921618 28665547 .............t......a. 28665526
NW_923240 2011630 .............t......a. 2011651
NT_011681 1195142 .............t......g. 1195163
NT_008046 35747280 ..a.................a. 35747259
NT_008046 51133553 .............t.....g.. 51133532
NT_007914 11076689 ..a..........t........ 11076668
NT_007819 8860669 .............t......a. 8860690
NT_005612 51269273 ....a...........t..... 51269294
NT_005612 98905995 .............t......a. 98905974
NT_005403 74194951 .............t......a. 74194930
NT_004487 21094094 .............t......a. 21094073
NT_032977 20821842 .............t......a. 20821863
NT_032977 78239614 .g.....c.............. 78239593
NT_011109 7284704 .............t......g. 7284725
NT_010783 4583184 .............t......a. 4583205
NT_024524 41611293 .............t.....g.. 41611272
NW_001838081 70254 .............t.....g.. 70233
NW_001838590 508254 .g.....c.............. 508275
NT_079596 49845920 ..a..........t........ 49845899
NT_079592 8868988 .............t......a. 8869009
NW_925495 7446038 .............t.....g.. 7446017
NW_922017 3972724 .g.....c.............. 3972703
NC_000001 50849924 .............t......a. 50849945
NC_000001 108267696 .g.....c.............. 108267675
NC_000001 169605452 .............t......a. 169605431
NC_000023 144752466 .............t......g. 144752487
NC_000008 122473731 ..a.................a. 122473710
NC_000008 137860004 .............t.....g.. 137859983
NC_000007 8870669 .............t......a. 8870690
NC_000007 150481066 ..a..........t........ 150481045
NC_000003 144774127 ....a...........t..... 144774148
NC_000003 192410849 .............t......a. 192410828
NC_000002 223985533 .............t......a. 223985512
NC_000019 35016486 .............t......g. 35016507
NC_000017 39309032 .............t......a. 39309053
NC_000013 60631293 .............t.....g.. 60631272
AC_000155 133719417 .............t......g. 133719438
AC_000140 117798700 ..a.................a. 117798679
AC_000140 133178418 .............t.....g.. 133178397
AC_000139 8722892 .............t......a. 8722913
AC_000139 144293149 ..a..........t........ 144293128
AC_000135 142145581 ....a...........t..... 142145602
AC_000135 189808932 .............t......a. 189808911
AC_000134 215837596 .............t......a. 215837575
AC_000151 31523420 .............t......g. 31523441
AC_000145 41321498 .............t.....g.. 41321477
AC_000133 48967745 .............t......a. 48967766
AC_000133 106213597 .g.....c.............. 106213576
AC_000133 140828144 .............t......a. 140828123
AC_000066 145064804 .............t......g. 145064825
AC_000051 118661739 ..a.................a. 118661718
AC_000051 134028998 .............t.....g.. 134028977
AC_000068 8918988 .............t......a. 8919009
AC_000068 149810352 ..a..........t........ 149810331
AC_000050 8840765 .............t......a. 8840786
AC_000050 145038106 ..a..........t........ 145038085
AC_000046 143196074 ....a...........t..... 143196095
AC_000046 190836832 .............t......a. 190836811
AC_000045 217751017 .............t......a. 217750996
AC_000062 31728885 .............t......g. 31728906
AC_000056 41589475 .............t.....g.. 41589454
AC_000044 49135823 .............t......a. 49135844
AC_000044 106442396 .g.....c.............. 106442375
AC_000044 142715236 .............t......a. 142715215
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 25,710,555
Number of extensions: 178
Number of successful extensions: 178
Number of sequences better than 1000.0: 134
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 178
Length of query: 22
Length of database: 31,910,071,267
Length adjustment: 16
Effective length of query: 6
Effective length of database: 31,910,047,347
Effective search space: 191460284082
Effective search space used: 191460284082
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)