BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2021
(23 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 29 422
gb|GL583036.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|DS990711.1| Homo sapiens SCAF_1112675837079 genomic scaf... 29 422
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 29 422
gb|DS486073.1| Homo sapiens SCAF_1103279188134 genomic scaf... 29 422
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 29 422
ref|NW_001838577.2| Homo sapiens chromosome 1 genomic conti... 29 422
ref|NW_921351.1| Homo sapiens chromosome 1 genomic contig, ... 29 422
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 29 422
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 29 422
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 29 422
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 29 422
gb|GL582987.1| Homo sapiens unplaced genomic scaffold scaff... 28 749
gb|CM000508.1| Homo sapiens chromosome 18, whole genome sho... 28 749
gb|DS990695.1| Homo sapiens SCAF_1112675837320 genomic scaf... 28 749
gb|CH003513.1| Homo sapiens chromosome 18, whole genome sho... 28 749
gb|CH003465.1| Homo sapiens chromosome 18, whole genome sho... 28 749
ref|NW_927129.1| Homo sapiens chromosome 18 genomic contig,... 28 749
ref|NW_001838469.1| Homo sapiens chromosome 18 genomic cont... 28 749
ref|NT_025028.14| Homo sapiens chromosome 18 genomic contig... 28 749
ref|NC_000018.9| Homo sapiens chromosome 18, GRCh37.p2 prim... 28 749
ref|AC_000150.1| Homo sapiens chromosome 18, alternate asse... 28 749
ref|AC_000061.1| Homo sapiens chromosome 18, alternate asse... 28 749
gb|GL583154.1| Homo sapiens unplaced genomic scaffold scaff... 28 907
gb|CM000495.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|DS990686.1| Homo sapiens SCAF_1112675837340 genomic scaf... 28 907
gb|CH003500.1| Homo sapiens chromosome 5, whole genome shot... 28 907
gb|CH003452.1| Homo sapiens chromosome 5, whole genome shot... 28 907
ref|NW_001838951.1| Homo sapiens chromosome 5 genomic conti... 28 907
ref|NW_922729.1| Homo sapiens chromosome 5 genomic contig, ... 28 907
ref|NT_006713.15| Homo sapiens chromosome 5 genomic contig,... 28 907
ref|NC_000005.9| Homo sapiens chromosome 5, GRCh37.p2 prima... 28 907
ref|AC_000137.1| Homo sapiens chromosome 5, alternate assem... 28 907
ref|AC_000048.1| Homo sapiens chromosome 5, alternate assem... 28 907
1_0 1 aagccctataacatcaaattcaa 23
CM000491 39030319 ................... 39030301
GL583036 6901288 ................... 6901270
DS990711 2295887 ................... 2295905
CH003496 37727743 ................... 37727725
DS486073 2295848 ................... 2295866
CH003448 40155918 ................... 40155900
NW_001838577 2238152 ................... 2238170
NW_921351 15055220 ................... 15055202
NT_032977 10883912 ................... 10883894
NC_000001 40911994 ................... 40911976
AC_000133 39030346 ................... 39030328
AC_000044 39194362 ................... 39194344
GL582987 26701608 ..c...........a....... 26701629
CM000508 68328248 ..c...........a....... 68328269
DS990695 19411791 ..c...........a....... 19411812
CH003513 74250051 ..c...........a....... 74250072
CH003465 67285281 ..c...........a....... 67285302
NW_927129 6494149 ..c...........a....... 6494170
NW_001838469 19411953 ..c...........a....... 19411974
NT_025028 19386927 ..c...........a....... 19386948
NC_000018 71596063 ..c...........a....... 71596084
AC_000150 68328604 ..c...........a....... 68328625
AC_000061 68460591 ..c...........a....... 68460612
GL583154 1443307 ....a............... 1443326
CM000495 84043679 ....a............... 84043660
DS990686 18125447 ....a............... 18125428
CH003500 88785734 ....a............... 88785715
CH003452 84230044 ....a............... 84230025
NW_001838951 18125293 ....a............... 18125274
NW_922729 18134717 ....a............... 18134698
NT_006713 39433488 ....a............... 39433469
NC_000005 88839129 ....a............... 88839110
AC_000137 84043402 ....a............... 84043383
AC_000048 84734873 ....a............... 84734854
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 33,261,793
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 1000.0: 34
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 34
Length of query: 23
Length of database: 31,910,071,267
Length adjustment: 17
Effective length of query: 6
Effective length of database: 31,910,045,852
Effective search space: 191460275112
Effective search space used: 191460275112
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)