BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2023
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000494.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
gb|GL582999.1|  Homo sapiens unplaced genomic scaffold scaff...    28     907
gb|DS990661.1|  Homo sapiens SCAF_1112675837344 genomic scaf...    28     907
gb|CH003499.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
gb|CH003451.1|  Homo sapiens chromosome 4, whole genome shot...    28     907
ref|NW_001838915.1|  Homo sapiens chromosome 4 genomic conti...    28     907
ref|NW_922162.1|  Homo sapiens chromosome 4 genomic contig, ...    28     907
ref|NT_016354.19|  Homo sapiens chromosome 4 genomic contig,...    28     907
ref|NC_000004.11|  Homo sapiens chromosome 4, GRCh37.p2 prim...    28     907
ref|AC_000136.1|  Homo sapiens chromosome 4, alternate assem...    28     907
ref|AC_000047.1|  Homo sapiens chromosome 4, alternate assem...    28     907

1_0          1        ggcagcaattcattgagtat 20
CM000494     89484351 .....a.............. 89484332
GL582999     3548333  .....a.............. 3548352
DS990661     18245401 .....a.............. 18245382
CH003499     92708464 .....a.............. 92708445
CH003451     89644364 .....a.............. 89644345
NW_001838915 18245330 .....a.............. 18245311
NW_922162    40861539 .....a.............. 40861520
NT_016354    18287674 .....a.............. 18287655
NC_000004    93739953 .....a.............. 93739934
AC_000136    89483780 .....a.............. 89483761
AC_000047    91036565 .....a.............. 91036546

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 28,166,248
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)