BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2044
         (19 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL582985.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|CM000498.1|  Homo sapiens chromosome 8, whole genome shot...    29     422
gb|DS990659.1|  Homo sapiens SCAF_1112675837198 genomic scaf...    29     422
gb|CH003503.1|  Homo sapiens chromosome 8, whole genome shot...    29     422
gb|CH003455.1|  Homo sapiens chromosome 8, whole genome shot...    29     422
ref|NW_001839136.1|  Homo sapiens chromosome 8 genomic conti...    29     422
ref|NW_923984.1|  Homo sapiens chromosome 8 genomic contig, ...    29     422
ref|NT_008046.16|  Homo sapiens chromosome 8 genomic contig,...    29     422
ref|NC_000008.10|  Homo sapiens chromosome 8, GRCh37.p2 prim...    29     422
ref|AC_000140.1|  Homo sapiens chromosome 8, alternate assem...    29     422
ref|AC_000051.1|  Homo sapiens chromosome 8, alternate assem...    29     422

1_0          1         gaagccatagccaaggaag 19
GL582985     4795754   ................... 4795736
CM000498     101490735 ................... 101490717
CM000498     101611302 ................... 101611284
DS990659     19432755  ................... 19432737
DS990659     19553322  ................... 19553304
CH003503     104592080 ................... 104592062
CH003455     101839784 ................... 101839766
NW_001839136 19432419  ................... 19432401
NW_001839136 19552963  ................... 19552945
NW_923984    19441669  ................... 19441651
NT_008046    19562762  ................... 19562744
NC_000008    106289213 ................... 106289195
AC_000140    101490895 ................... 101490877
AC_000140    101611439 ................... 101611421
AC_000051    102476351 ................... 102476333

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 23,421,742
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 15
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)