BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2071
         (19 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583021.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|CM000501.1|  Homo sapiens chromosome 11, whole genome sho...    29     422
gb|DS990670.1|  Homo sapiens SCAF_1112675837213 genomic scaf...    29     422
gb|CH003506.1|  Homo sapiens chromosome 11, whole genome sho...    29     422
gb|CH003458.1|  Homo sapiens chromosome 11, whole genome sho...    29     422
ref|NW_925173.1|  Homo sapiens chromosome 11 genomic contig,...    29     422
ref|NT_033899.8|  Homo sapiens chromosome 11 genomic contig,...    29     422
ref|NW_001838042.2|  Homo sapiens chromosome 11 genomic cont...    29     422
ref|NC_000011.9|  Homo sapiens chromosome 11, GRCh37.p2 prim...    29     422
ref|AC_000143.1|  Homo sapiens chromosome 11, alternate asse...    29     422
ref|AC_000054.1|  Homo sapiens chromosome 11, alternate asse...    29     422

1_0          1         gacaaagaggcaagaaaaa 19
GL583021     6226312   ................... 6226330
CM000501     106208416 ................... 106208398
DS990670     10477631  ................... 10477649
CH003506     111631518 ................... 111631500
CH003458     106943083 ................... 106943065
NW_925173    20306934  ................... 20306916
NT_033899    13846963  ................... 13846945
NW_001838042 10477766  ................... 10477784
NC_000011    110284547 ................... 110284529
AC_000143    106209243 ................... 106209225
AC_000054    107438034 ................... 107438016

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 45,153,816
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)