BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2072
         (19 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL583134.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|CM000501.1|  Homo sapiens chromosome 11, whole genome sho...    29     422
gb|DS990767.1|  Homo sapiens SCAF_1112675837137 genomic scaf...    29     422
gb|CH003506.1|  Homo sapiens chromosome 11, whole genome sho...    29     422
gb|CH003458.1|  Homo sapiens chromosome 11, whole genome sho...    29     422
ref|NW_925173.1|  Homo sapiens chromosome 11 genomic contig,...    29     422
ref|NT_033899.8|  Homo sapiens chromosome 11 genomic contig,...    29     422
ref|NW_001838043.2|  Homo sapiens chromosome 11 genomic cont...    29     422
ref|NC_000011.9|  Homo sapiens chromosome 11, GRCh37.p2 prim...    29     422
ref|AC_000143.1|  Homo sapiens chromosome 11, alternate asse...    29     422
ref|AC_000054.1|  Homo sapiens chromosome 11, alternate asse...    29     422

1_0          1         gccttcagcaccagacaca 19
GL583134     4416648   ................... 4416630
CM000501     116921017 ................... 116920999
DS990767     5693056   ................... 5693074
CH003506     123701545 ................... 123701527
CH003458     117631579 ................... 117631561
NW_925173    31010247  ................... 31010229
NT_033899    24544308  ................... 24544290
NW_001838043 5693093   ................... 5693111
NC_000011    120981892 ................... 120981874
AC_000143    116921955 ................... 116921937
AC_000054    118141347 ................... 118141329

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 22,091,820
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)