BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2095
(19 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL582990.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|CM000505.1| Homo sapiens chromosome 15, whole genome sho... 29 422
gb|DS990671.1| Homo sapiens SCAF_1112675837203 genomic scaf... 29 422
ref|NW_925884.1| Homo sapiens chromosome 15 genomic contig,... 29 422
ref|NT_010194.17| Homo sapiens chromosome 15 genomic contig... 29 422
ref|NC_000015.9| Homo sapiens chromosome 15, GRCh37.p2 prim... 29 422
ref|AC_000058.1| Homo sapiens chromosome 15, alternate asse... 29 422
1_0 1 ccaagagaaaaactgaaaa 19
GL582990 16857991 ................... 16857973
CM000505 38958233 ................... 38958215
DS990671 12232793 ................... 12232811
NW_925884 18123202 ................... 18123184
NT_010194 32926496 ................... 32926478
NC_000015 62135939 ................... 62135921
AC_000058 39025385 ................... 39025367
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 52,906,646
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 1000.0: 7
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)