BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2095
         (19 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|GL582990.1|  Homo sapiens unplaced genomic scaffold scaff...    29     422
gb|CM000505.1|  Homo sapiens chromosome 15, whole genome sho...    29     422
gb|DS990671.1|  Homo sapiens SCAF_1112675837203 genomic scaf...    29     422
ref|NW_925884.1|  Homo sapiens chromosome 15 genomic contig,...    29     422
ref|NT_010194.17|  Homo sapiens chromosome 15 genomic contig...    29     422
ref|NC_000015.9|  Homo sapiens chromosome 15, GRCh37.p2 prim...    29     422
ref|AC_000058.1|  Homo sapiens chromosome 15, alternate asse...    29     422

1_0       1        ccaagagaaaaactgaaaa 19
GL582990  16857991 ................... 16857973
CM000505  38958233 ................... 38958215
DS990671  12232793 ................... 12232811
NW_925884 18123202 ................... 18123184
NT_010194 32926496 ................... 32926478
NC_000015 62135939 ................... 62135921
AC_000058 39025385 ................... 39025367

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 52,906,646
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 1000.0: 7
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)