BLASTN 2.2.24 [Aug-08-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= virsi2123
(19 letters)
Database: NCBI genome chromosomes - human
1495 sequences; 31,910,071,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|CM000491.1| Homo sapiens chromosome 1, whole genome shot... 29 422
gb|GL583007.1| Homo sapiens unplaced genomic scaffold scaff... 29 422
gb|DS990691.1| Homo sapiens SCAF_1112675837255 genomic scaf... 29 422
gb|CH003496.1| Homo sapiens chromosome 1, whole genome shot... 29 422
gb|CH003448.1| Homo sapiens chromosome 1, whole genome shot... 29 422
ref|NW_001838589.2| Homo sapiens chromosome 1 genomic conti... 29 422
ref|NW_921795.1| Homo sapiens chromosome 1 genomic contig, ... 29 422
ref|NT_032977.9| Homo sapiens chromosome 1 genomic contig, ... 29 422
ref|NC_000001.10| Homo sapiens chromosome 1, GRCh37.p2 prim... 29 422
ref|AC_000133.1| Homo sapiens chromosome 1, alternate assem... 29 422
ref|AC_000044.1| Homo sapiens chromosome 1, alternate assem... 29 422
1_0 1 gggaaatgcagagataaaa 19
CM000491 93841546 ................... 93841564
GL583007 11631297 ................... 11631315
DS990691 8387865 ................... 8387847
CH003496 95427104 ................... 95427122
CH003448 94727568 ................... 94727586
NW_001838589 8387707 ................... 8387689
NW_921795 11781677 ................... 11781695
NT_032977 65692295 ................... 65692313
NC_000001 95720377 ................... 95720395
AC_000133 93842302 ................... 93842320
AC_000044 93974783 ................... 93974801
Database: NCBI genome chromosomes - human
Posted date: Apr 4, 2011 10:12 PM
Number of letters in database: 31,910,071,267
Number of sequences in database: 1495
Lambda K H
0.192 0.176 0.357
Gapped
Lambda K H
0.192 0.176 0.357
Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 32,705,003
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 19
Length of database: 31,910,071,267
Length adjustment: 13
Effective length of query: 6
Effective length of database: 31,910,051,832
Effective search space: 191460310992
Effective search space used: 191460310992
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)