BLASTN 2.2.24 [Aug-08-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= virsi2138
         (21 letters)

Database: NCBI genome chromosomes - human 
           1495 sequences; 31,910,071,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CM000492.1|  Homo sapiens chromosome 2, whole genome shot...    32      62
gb|GL583135.1|  Homo sapiens unplaced genomic scaffold scaff...    32      62
gb|DS990654.1|  Homo sapiens SCAF_1112675837378 genomic scaf...    32      62
gb|CH003497.1|  Homo sapiens chromosome 2, whole genome shot...    32      62
gb|CH003449.1|  Homo sapiens chromosome 2, whole genome shot...    32      62
ref|NW_927719.1|  Homo sapiens chromosome 2 genomic contig, ...    32      62
ref|NW_001838769.1|  Homo sapiens chromosome 2 genomic conti...    32      62
ref|NT_022184.15|  Homo sapiens chromosome 2 genomic contig,...    32      62
ref|NC_000002.11|  Homo sapiens chromosome 2, GRCh37.p2 prim...    32      62
ref|AC_000134.1|  Homo sapiens chromosome 2, alternate assem...    32      62
ref|AC_000045.1|  Homo sapiens chromosome 2, alternate assem...    32      62

1_0          1        aacaggcagcgtggtcattgt 21
CM000492     73037788 ..................... 73037808
GL583135     698340   ..................... 698320
DS990654     43134144 ..................... 43134164
CH003497     76063630 ..................... 76063650
CH003449     73038702 ..................... 73038722
NW_927719    73084946 ..................... 73084966
NW_001838769 43133971 ..................... 43133991
NT_022184    52124055 ..................... 52124075
NC_000002    73302168 ..................... 73302188
AC_000134    73037727 ..................... 73037747
AC_000045    73153011 ..................... 73153031

  Database: NCBI genome chromosomes - human
    Posted date:  Apr 4, 2011  10:12 PM
  Number of letters in database: 31,910,071,267
  Number of sequences in database:  1495
  
Lambda     K      H
   0.192    0.176    0.357 

Gapped
Lambda     K      H
   0.192    0.176    0.357 


Matrix: blastn matrix:5 -4
Gap Penalties: Existence: 25, Extension: 10
Number of Sequences: 1495
Number of Hits to DB: 19,589,577
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 1000.0: 11
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 11
Length of query: 21
Length of database: 31,910,071,267
Length adjustment: 15
Effective length of query: 6
Effective length of database: 31,910,048,842
Effective search space: 191460293052
Effective search space used: 191460293052
X1: 73 (20.2 bits)
X2: 108 (29.8 bits)
X3: 361 (99.8 bits)
S1: 91 (27.7 bits)
S2: 91 (27.7 bits)